View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2133_high_8 (Length: 387)
Name: NF2133_high_8
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2133_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 315
Target Start/End: Original strand, 2403997 - 2404298
Alignment:
| Q |
14 |
gaaggaacaagaagaaagtgaaattttcagaaaatgtgatggtgaaggaatttagagaaaaaccggggaagaaaaacagagtatcaattaatgaatgcag |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2403997 |
gaaggaacaagaagaaagtgaaattttcagaaaatgtgatggtaaaggaatttagagaaaaaccggggaagaaaaacagagtatcaattaatgaatgcag |
2404096 |
T |
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| Q |
114 |
aaatgaaattccagaaacaaaagcaatgccagcaaatagagttgctttgtacaatggaattttaagagatagagttcaaagaatggggtgttgtcattga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2404097 |
aaatgaaattccagaaacaaaagcaatgccagcaaatagagttgctttgtacaatggaattttaagagatagagttcaaagaatggggtgttgtcattga |
2404196 |
T |
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| Q |
214 |
tcatcttggttatggaacttagaacatgggaaagaatttttatggtgtagaacatgggaggttagaacaataagaaattagaagatggtaaaaaaataaa |
313 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2404197 |
tcatcttggttatggaacttagaacatggaaaagaatttttatggtgtagaacatgggaggttagaacaataagaaattagaagatggtaaaaaattaaa |
2404296 |
T |
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| Q |
314 |
tc |
315 |
Q |
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|| |
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| T |
2404297 |
tc |
2404298 |
T |
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