View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2133_high_9 (Length: 384)

Name: NF2133_high_9
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2133_high_9
NF2133_high_9
[»] chr7 (1 HSPs)
chr7 (5-384)||(48091038-48091430)


Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 5 - 384
Target Start/End: Original strand, 48091038 - 48091430
Alignment:
Q  5 taatactacagagtgcaaaagagggtactttaacatgcatcttactatatatgcaatgtatatatgcatgacagtccacaccttaaattttattttccaa 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  48091038 taatactacagagtgcaaaagagggtactttaacatgcatcttactatatatgcaatgtat----gcatgacagtccacaccttaaattttattttccaa 48091133  T
Q  105 tgtatg----aataaaatgcaactactacct-----------tttgttgtgtgggccattcttccatcaatattattttccaaaatcatcatatacatat 189  Q
    ||||||    |||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48091134 tgtatgtatgaataaaatgcaactactacctgtgtactaccttttgttgtgtgggccattcttccatcaatattattttccaaaatcatcatatacatat 48091233  T
Q  190 taatatctctgacacactata--tatatagcacctttcctcattcctctacttacagtcttcatatacattgctaattttaagttgaattaaatccatgg 287  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48091234 taatatctctgacacactatatatatatagcacctttcctcattcctctacttacagtcttcatatacattgctaattttaagttgaattaaatccatgg 48091333  T
Q  288 ctgccactatggttttgcagtcttattacatcaatgtagtgatcatattgatggtggcattgacgagttgtttcaaaggcacagtggcacaacgtgc 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48091334 ctgccactatggttttgcagtcttattacatcaatgtagtgatcatattgatggtggcattgacgagttgtttcaaaggcacagtggcacaacgtgc 48091430  T

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