View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2133_low_11 (Length: 477)

Name: NF2133_low_11
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2133_low_11
NF2133_low_11
[»] chr6 (3 HSPs)
chr6 (1-465)||(19746789-19747253)
chr6 (345-397)||(33568839-33568891)
chr6 (335-397)||(33576015-33576077)
[»] chr7 (7 HSPs)
chr7 (353-465)||(23999555-23999667)
chr7 (348-448)||(24021626-24021726)
chr7 (342-384)||(24016641-24016683)
chr7 (334-384)||(26237458-26237508)
chr7 (334-384)||(26256619-26256669)
chr7 (176-216)||(24030965-24031005)
chr7 (334-370)||(24035595-24035631)
[»] chr3 (3 HSPs)
chr3 (335-465)||(36339960-36340090)
chr3 (335-400)||(25901439-25901504)
chr3 (335-385)||(25915472-25915522)
[»] scaffold0707 (1 HSPs)
scaffold0707 (345-397)||(5233-5285)
[»] chr8 (7 HSPs)
chr8 (142-218)||(11345431-11345507)
chr8 (142-218)||(11359309-11359385)
chr8 (350-465)||(11338671-11338786)
chr8 (143-218)||(11338905-11338980)
chr8 (350-465)||(11345196-11345311)
chr8 (350-465)||(11359074-11359189)
chr8 (354-465)||(11339514-11339625)
[»] chr5 (3 HSPs)
chr5 (340-465)||(23086632-23086757)
chr5 (140-193)||(23086420-23086473)
chr5 (53-95)||(23086318-23086360)
[»] chr4 (8 HSPs)
chr4 (334-395)||(23847337-23847398)
chr4 (149-209)||(3557376-3557436)
chr4 (154-208)||(3565399-3565453)
chr4 (335-385)||(10571451-10571501)
chr4 (163-208)||(1686646-1686691)
chr4 (347-400)||(10467900-10467953)
chr4 (347-400)||(10482038-10482091)
chr4 (349-393)||(23840539-23840583)
[»] chr2 (1 HSPs)
chr2 (337-385)||(25376921-25376969)


Alignment Details
Target: chr6 (Bit Score: 445; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 19747253 - 19746789
Alignment:
Q  1 tatctgaagaattagggactttccgatgctacaacacttcatcagaaactttcaagttcggttttggttgtgatatttcaacaggaacttacaagttggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747253 tatctgaagaattagggactttccgatgctacaacacttcatcagaaactttcaagttcggttttggttgtgatatttcaacaggaacttacaagttggt 19747154  T
Q  101 ggcgtatcgggcagaagaagatgatgcgaaccacaacggttcatggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgag 200  Q
    ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747153 ggcatatcgggcagaagaagatgatgcgaaccacagcggttcatggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgag 19747054  T
Q  201 agtttccctttgattcctattggatgtattcaattcaatcgaaataacaatggcgtgcatttaagtggcaagattaattggttggttattcgcaactatt 300  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19747053 agtttccctttgattcctattggatgtattcaaatcaatcgaaataacaatggcgtgcatttaagtggcaagattaattggttggttattcgcaactatt 19746954  T
Q  301 tttgtgcttcttatcattacgaatgtatgaattatgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctacc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  19746953 tttgtgcttcttatcattacgaatgtatgaattatgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctgcc 19746854  T
Q  401 atctggttttgatgaagtcccacactttcagccaactcttcatgttctgatggactgcctttgct 465  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19746853 atttggttttgatgaagtcccacactttcagccaactcttcatgttctgatggactgcctttgct 19746789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 33568839 - 33568891
Alignment:
Q  345 tttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgct 397  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  33568839 tttgtgattgtttcccttgatctttcgccggagacatacacacaatttttgct 33568891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 397
Target Start/End: Original strand, 33576015 - 33576077
Alignment:
Q  335 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgct 397  Q
    ||||||| ||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||    
T  33576015 tgttgagaaatgtgtgattgtttcgcttgatcttttgacagagacatacacacaatttttgct 33576077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 353 - 465
Target Start/End: Complemental strand, 23999667 - 23999555
Alignment:
Q  353 tgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctgatg 452  Q
    |||||||||| |||||| |||  | |||||||  ||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||| | |||    
T  23999667 tgtttcccttaatcttttgaccaatacatacatgcaatttttgctacctcctagttttgatgaagtcccacactttcagccaactcttcatgttttcatg 23999568  T
Q  453 gactgcctttgct 465  Q
    |||| ||||||||    
T  23999567 gactacctttgct 23999555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 448
Target Start/End: Original strand, 24021626 - 24021726
Alignment:
Q  348 gtgattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttc 447  Q
    |||||||||||||||||||||||||| ||||||  ||  ||||||||| | || || | ||||||||| || |||   ||||||||||||||||| ||||    
T  24021626 gtgattgtttcccttgatctttcgaccgagacaaccatgcaatttttgttgccttccgattttgatgaggtgccatgttttcagccaactcttcaagttc 24021725  T
Q  448 t 448  Q
    |    
T  24021726 t 24021726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 384
Target Start/End: Original strand, 24016641 - 24016683
Alignment:
Q  342 caatttgtgattgtttcccttgatctttcgactgagacataca 384  Q
    ||||||||||||||||| |||||||||||||| ||||||||||    
T  24016641 caatttgtgattgtttctcttgatctttcgacggagacataca 24016683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 26237458 - 26237508
Alignment:
Q  334 atgttgagcaatttgtgattgtttcccttgatctttcgactgagacataca 384  Q
    |||||||||||||||||||| |||| ||||||||||||||  |||||||||    
T  26237458 atgttgagcaatttgtgattctttcgcttgatctttcgacaaagacataca 26237508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 26256619 - 26256669
Alignment:
Q  334 atgttgagcaatttgtgattgtttcccttgatctttcgactgagacataca 384  Q
    |||||||||||||||||||| |||| ||||||||||| || ||||||||||    
T  26256619 atgttgagcaatttgtgattatttcgcttgatctttcaacggagacataca 26256669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 24030965 - 24031005
Alignment:
Q  176 tgataattgttggagaaatattgagagtttccctttgattc 216  Q
    |||||||||||||||||||||| | | ||||||||||||||    
T  24030965 tgataattgttggagaaatattaacaatttccctttgattc 24031005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 370
Target Start/End: Original strand, 24035595 - 24035631
Alignment:
Q  334 atgttgagcaatttgtgattgtttcccttgatctttc 370  Q
    |||||| |||||||||||||||||| |||||||||||    
T  24035595 atgttgtgcaatttgtgattgtttcacttgatctttc 24035631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 465
Target Start/End: Original strand, 36339960 - 36340090
Alignment:
Q  335 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagcca 434  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||||||||  || |||||||| ||  | |||||| | || || |||  | || |||||    
T  36339960 tgttgagcaattggtgattgtttcgcttgatctttcgacggagacatacaggcagtttttgcttcctgcaggttttaaggaggtgccatgcgttgagcca 36340059  T
Q  435 actcttcatgttctgatggactgcctttgct 465  Q
     ||||||  ||||||||||||||||||||||    
T  36340060 tctcttcgggttctgatggactgcctttgct 36340090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 400
Target Start/End: Complemental strand, 25901504 - 25901439
Alignment:
Q  335 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctacc 400  Q
    ||||||||||| |||||||||||| |||||||| || |||||| ||||||| || || ||||||||    
T  25901504 tgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacc 25901439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 25915522 - 25915472
Alignment:
Q  335 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacac 385  Q
    ||||||||||| |||||||||||| |||||||| || |||||| |||||||    
T  25915522 tgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacac 25915472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 5233 - 5285
Alignment:
Q  345 tttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgct 397  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  5233 tttgtgattgtttcccttgatctttcgccggagacatacacacaatttttgct 5285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 11345507 - 11345431
Alignment:
Q  142 catggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccctttgattcct 218  Q
    |||||||||||| ||||||| || ||||||| |||||| ||||||||||||||||| | ||||| ||||||||||||    
T  11345507 catggagaagtcgggtcagagttctcagtttgagtgatgattgttggagaaatattaacagttttcctttgattcct 11345431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 11359385 - 11359309
Alignment:
Q  142 catggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccctttgattcct 218  Q
    ||||||||||||||||||||||| ||||||| || ||| |||||||||||||||| || ||||| ||| ||||||||    
T  11359385 catggagaagtcaggtcagaattctcagtttgagcgatgattgttggagaaatatcgacagttttcctgtgattcct 11359309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 350 - 465
Target Start/End: Complemental strand, 11338786 - 11338671
Alignment:
Q  350 gattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctg 449  Q
    ||||||||||||||||||||| |||||||||||||  |||||||   | || |||||| |||||||  |||||  |||||||||||||||||| |||||     
T  11338786 gattgtttcccttgatctttcaactgagacatacatgcaattttgtttgccttctggtcttgatgagatcccatgctttcagccaactcttcaggttctt 11338687  T
Q  450 atggactgcctttgct 465  Q
     ||||| | |||||||    
T  11338686 ttggaccgactttgct 11338671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 11338980 - 11338905
Alignment:
Q  143 atggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccctttgattcct 218  Q
    |||||||||||| |||||| || ||||||| |||||| ||||||||||||||||| | ||||| ||||||||||||    
T  11338980 atggagaagtcatgtcagagttctcagtttgagtgatgattgttggagaaatattaacagttttcctttgattcct 11338905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 350 - 465
Target Start/End: Complemental strand, 11345311 - 11345196
Alignment:
Q  350 gattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctg 449  Q
    ||||||||||||||| ||||| |||||||||||||  |||||||   | || | |||||||||||| ||||||  |||||||||||||||||| |||||     
T  11345311 gattgtttcccttgacctttcaactgagacatacatgcaattttgtttgccttttggttttgatgaggtcccaagctttcagccaactcttcaggttctt 11345212  T
Q  450 atggactgcctttgct 465  Q
     ||||| | |||||||    
T  11345211 ttggaccgactttgct 11345196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 350 - 465
Target Start/End: Complemental strand, 11359189 - 11359074
Alignment:
Q  350 gattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctg 449  Q
    |||||| |||||||||||||| |||||| ||||||  |||||||  || || |||||||||||||| ||||||  |||| |||||||||||||| ||||     
T  11359189 gattgtctcccttgatctttcaactgaggcatacatgcaattttcactgccttctggttttgatgaggtcccatgcttttagccaactcttcattttctt 11359090  T
Q  450 atggactgcctttgct 465  Q
     ||||| | |||||||    
T  11359089 ttggaccgactttgct 11359074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 465
Target Start/End: Complemental strand, 11339625 - 11339514
Alignment:
Q  354 gtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactcttcatgttctgatgg 453  Q
    |||||||||||||| || | ||||||||| |  |||||||   |||| |||||||||||||| || ||  ||||||||||||||||||| |||||  |||    
T  11339625 gtttcccttgatctatcaattgagacatatatgcaattttgtttaccttctggttttgatgaggtaccctactttcagccaactcttcaggttcttttgg 11339526  T
Q  454 actgcctttgct 465  Q
    || | |||||||    
T  11339525 accggctttgct 11339514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 23086632 - 23086757
Alignment:
Q  340 agcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctaccatctggttttgatgaagtcccacactttcagccaactct 439  Q
    |||| ||||| |||||||| |||||||| || || ||||||||||  || || ||||| ||    ||||||||||| || ||| | | ||||||| ||||    
T  23086632 agcagtttgtcattgtttcgcttgatctatcaacggagacatacaagcagttgttgctgcctcaaggttttgatgaggtgccagaatatcagccatctct 23086731  T
Q  440 tcatgttctgatggactgcctttgct 465  Q
    ||||||||||| ||||||||||||||    
T  23086732 tcatgttctgaaggactgcctttgct 23086757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 23086420 - 23086473
Alignment:
Q  140 ttcatggagaagtcaggtcagaattttcagtttaagtgataattgttggagaaa 193  Q
    |||||||| | || |||||||||||||||||||  |||||||||||||||||||    
T  23086420 ttcatggaaatgtgaggtcagaattttcagttttggtgataattgttggagaaa 23086473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 23086318 - 23086360
Alignment:
Q  53 caagttcggttttggttgtgatatttcaacaggaacttacaag 95  Q
    |||||||  ||||||||||||||||||||| ||||||||||||    
T  23086318 caagttcacttttggttgtgatatttcaaccggaacttacaag 23086360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 23847398 - 23847337
Alignment:
Q  334 atgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttg 395  Q
    ||||||| ||| | |||||| ||||||||||||||||||| ||||||||||  |||||||||    
T  23847398 atgttgatcaactcgtgattctttcccttgatctttcgaccgagacatacatccaatttttg 23847337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 3557376 - 3557436
Alignment:
Q  149 aagtcaggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccct 209  Q
    |||| |||| ||| ||||||||||| ||||||||  ||||||||||||||| |||||||||    
T  3557376 aagtgaggttagagttttcagtttaggtgataatgtttggagaaatattgaaagtttccct 3557436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 3565399 - 3565453
Alignment:
Q  154 aggtcagaattttcagtttaagtgataattgttggagaaatattgagagtttccc 208  Q
    |||| ||| ||||||||||| ||||||||  ||||||||||||||| ||||||||    
T  3565399 aggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagtttccc 3565453  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 10571501 - 10571451
Alignment:
Q  335 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacac 385  Q
    ||||||||||| |||||||||||| |||||||| || |||||| |||||||    
T  10571501 tgttgagcaatatgtgattgtttcacttgatctctcaactgagtcatacac 10571451  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 1686691 - 1686646
Alignment:
Q  163 ttttcagtttaagtgataattgttggagaaatattgagagtttccc 208  Q
    ||||||||||| ||||||||  ||||||||||||||| ||||||||    
T  1686691 ttttcagtttaggtgataatgtttggagaaatattgaaagtttccc 1686646  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 400
Target Start/End: Original strand, 10467900 - 10467953
Alignment:
Q  347 tgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctacc 400  Q
    ||||||| |||| |||||||| || |||||||||||||| ||||| ||||||||    
T  10467900 tgtgattctttcacttgatctctcaactgagacatacactcaattgttgctacc 10467953  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 400
Target Start/End: Original strand, 10482038 - 10482091
Alignment:
Q  347 tgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctacc 400  Q
    ||||||| |||| |||||||| || |||||||||||||| ||||| ||||||||    
T  10482038 tgtgattctttcacttgatctctcaactgagacatacactcaattgttgctacc 10482091  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 393
Target Start/End: Original strand, 23840539 - 23840583
Alignment:
Q  349 tgattgtttcccttgatctttcgactgagacatacacacaatttt 393  Q
    ||||| ||||||||||||||||||| ||||||||||  |||||||    
T  23840539 tgattctttcccttgatctttcgaccgagacatacatccaatttt 23840583  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 385
Target Start/End: Original strand, 25376921 - 25376969
Alignment:
Q  337 ttgagcaatttgtgattgtttcccttgatctttcgactgagacatacac 385  Q
    ||||| ||| |||||||||||| || ||||| |||||||||||||||||    
T  25376921 ttgagaaatatgtgattgtttcgctcgatctctcgactgagacatacac 25376969  T

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