View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2133_low_15 (Length: 384)
Name: NF2133_low_15
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2133_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 52712836 - 52712477
Alignment:
| Q |
18 |
tgaggaagcttgcgagcgccaataatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52712836 |
tgaggaagcttgcgagcgccaataatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttga |
52712737 |
T |
|
| Q |
118 |
cggaggctacaataacctgaagaaacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
52712736 |
cggaggctacaataacctgaagaaacctagtaaaagggcttcccattggcttttggaaacggtaataccgaacaccggcagctagaacaacgatagataa |
52712637 |
T |
|
| Q |
218 |
aaccgtagttattgtgggaattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52712636 |
aaccgtagttattgtgggaattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgata |
52712537 |
T |
|
| Q |
318 |
gcaaagaaaaaccaattaaagaaagcgtatttcttttggacttctttttcatctcactcg |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52712536 |
gcaaagaaaaaccaattaaagaaagcgtatttcttttggacttctttttcatctccctcg |
52712477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 52721657 - 52721298
Alignment:
| Q |
18 |
tgaggaagcttgcgagcgccaataatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||| || |||||||||||| |
|
|
| T |
52721657 |
tgaggaagcttgcgagcgccaataatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctacggaaactccttttcgatgtttcttga |
52721558 |
T |
|
| Q |
118 |
cggaggctacaataacctgaagaaacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
52721557 |
cggaggctacaataacctgaagaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataa |
52721458 |
T |
|
| Q |
218 |
aaccgtagttattgtgggaattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgata |
317 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52721457 |
aaccatagttattgtgggtattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccatgttgata |
52721358 |
T |
|
| Q |
318 |
gcaaagaaaaaccaattaaagaaagcgtatttcttttggacttctttttcatctcactcg |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
52721357 |
gcaaagaaaaaccaattaaagaaagcgtatttctgttggacttctttttcatctccctcg |
52721298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 21 - 377
Target Start/End: Complemental strand, 52699014 - 52698658
Alignment:
| Q |
21 |
ggaagcttgcgagcgccaataatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacgg |
120 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| |||||||| ||||||| || ||||||||||| |||||||||| | |||||||||| | | |
|
|
| T |
52699014 |
ggaagcttgcgagcaccaataatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatag |
52698915 |
T |
|
| Q |
121 |
aggctacaataacctgaagaaacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaac |
220 |
Q |
| |
|
| |||||||||||||||||||||||||| || ||||||||||||| ||||| ||||| |||||| ||| ||| | || | | ||| ||||||| || |
|
|
| T |
52698914 |
aagctacaataacctgaagaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataat |
52698815 |
T |
|
| Q |
221 |
cgtagttattgtgggaattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagca |
320 |
Q |
| |
|
||||||||||||||| | | |||||||||||| |||||||| || | |||| ||||||||||| || ||||||||||| |||||||||||||| ||| |
|
|
| T |
52698814 |
cgtagttattgtgggtaatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggca |
52698715 |
T |
|
| Q |
321 |
aagaaaaaccaattaaagaaagcgtatttcttttggacttctttttcatctcactcg |
377 |
Q |
| |
|
||| |||||||||||||||||| | ||||| ||||||||||||||||||||| |||| |
|
|
| T |
52698714 |
aagtaaaaccaattaaagaaagagaatttcatttggacttctttttcatctccctcg |
52698658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University