View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2133_low_16 (Length: 378)

Name: NF2133_low_16
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2133_low_16
NF2133_low_16
[»] chr6 (15 HSPs)
chr6 (90-282)||(26146828-26147020)
chr6 (24-265)||(26062734-26062980)
chr6 (24-265)||(26082703-26082949)
chr6 (105-282)||(25548656-25548833)
chr6 (39-265)||(25453157-25453399)
chr6 (82-265)||(25489066-25489249)
chr6 (82-265)||(24771350-24771533)
chr6 (278-361)||(26146722-26146806)
chr6 (284-361)||(25514562-25514640)
chr6 (279-349)||(25548558-25548628)
chr6 (292-361)||(26061341-26061410)
chr6 (292-361)||(26081311-26081380)
chr6 (311-361)||(25986879-25986929)
chr6 (312-361)||(25488093-25488142)
chr6 (34-78)||(25548859-25548903)
[»] chr2 (1 HSPs)
chr2 (278-345)||(17988740-17988807)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 90 - 282
Target Start/End: Complemental strand, 26147020 - 26146828
Alignment:
Q  90 ataggactctaccaaattccagatggattggatattgatattcagacctgatctagcnnnnnnnttgaggaaagcttttgtgaattcatttgactttgat 189  Q
    |||||||||||||||||||||||||||||| |||||||   ||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  26147020 ataggactctaccaaattccagatggattgcatattgaagctcagacctgatctagcgaaaaaattgaggaaagcttttgtgaattcatttgactttgat 26146921  T
Q  190 aaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcatagttaactaaaacaccatataaaaactactttttcataa 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26146920 aaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcataggtaactaaaacaccatataaaaactactttttcataa 26146828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 24 - 265
Target Start/End: Complemental strand, 26062980 - 26062734
Alignment:
Q  24 agagagagacatcgatccaagcatcagtaccagcttacattctgaaagaacac----ccatccttcccacataggactctaccaaattccagatggattg 119  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||  |     |||| ||||||||||||||||||||||||||||||||||||||    
T  26062980 agagagggacatcgatccaagcatcagtaccagcttacattctgaaagataattatgccattcttcccacataggactctaccaaattccagatggattg 26062881  T
Q  120 gatattgatattcagacctgatctagcnnnnnnn-ttgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaattaca 218  Q
    ||||||||  ||||| |||||||||||        ||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| | ||||    
T  26062880 gatattgaagttcaggcctgatctagcgaaaaaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaatagattataaacactaca 26062781  T
Q  219 tacaatgcaaatattgaattttcatagttaactaaaacaccatataa 265  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  26062780 tacaatgcaaatattcaattttcatagttaactaaaacaccatataa 26062734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 24 - 265
Target Start/End: Complemental strand, 26082949 - 26082703
Alignment:
Q  24 agagagagacatcgatccaagcatcagtaccagcttacattctgaaagaacac----ccatccttcccacataggactctaccaaattccagatggattg 119  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||  |     |||| ||||||||||||||||||||||||||||||||||||||    
T  26082949 agagagggacatcgatccaagcatcagtaccagcttacattctgaaagataattatgccattcttcccacataggactctaccaaattccagatggattg 26082850  T
Q  120 gatattgatattcagacctgatctagcnnnnnnn-ttgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaattaca 218  Q
    ||||||||  ||||| |||||||||||        ||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| | ||||    
T  26082849 gatattgaagttcaggcctgatctagcgaaaaaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaatagattataaacactaca 26082750  T
Q  219 tacaatgcaaatattgaattttcatagttaactaaaacaccatataa 265  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  26082749 tacaatgcaaatattcaattttcatagttaactaaaacaccatataa 26082703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 105 - 282
Target Start/End: Complemental strand, 25548833 - 25548656
Alignment:
Q  105 attccagatggattggatattgatattcagacctgatctagcnnnnnnnttgaggaaagcttttgtgaattcatttgactttgataaaaaccagaataga 204  Q
    ||||||||||||||| |||||||   ||||||||||||||||        |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25548833 attccagatggattgaatattgaagctcagacctgatctagcgaaaaaaatgaggaaagcttttgtcaattcatttgactttgataaaaaccagaataga 25548734  T
Q  205 ttataaaaattacatacaatgcaaatattgaattttcatagttaactaaaacaccatataaaaactactttttcataa 282  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25548733 ttataaaaattacatacaatgcaaatattgaatattcatagttaactaaaacaccatataaaaactactttttcataa 25548656  T

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Target: chr6; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 39 - 265
Target Start/End: Complemental strand, 25453399 - 25453157
Alignment:
Q  39 tccaagcatcagtaccagcttacattctgaaagaacaccc--------------atccttcccacataggactctaccaaattccagatggattggatat 124  Q
    |||| |||||||||||||||||||||||||||||||||||              || ||||||| |||||||||||||||||||||||||||||||||||    
T  25453399 tccacgcatcagtaccagcttacattctgaaagaacaccctcactaattatgccattcttcccatataggactctaccaaattccagatggattggatat 25453300  T
Q  125 tgatattcagacctgatctagcnnnnnnnttgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaatt--acataca 222  Q
    |||  |||||  ||||||||||       ||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||| |  |||||||    
T  25453299 tgaagttcaggtctgatctagcaaaaaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaatagattataaaaactacacataca 25453200  T
Q  223 atgcaaatattgaattttcatagttaactaaaacaccatataa 265  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  25453199 atgcaaatattgaattttcatagttaactaaaacaccacataa 25453157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 82 - 265
Target Start/End: Complemental strand, 25489249 - 25489066
Alignment:
Q  82 cttcccacataggactctaccaaattccagatggattggatattgatattcagacctgatctagcnnnnnnn-ttgaggaaagcttttgtgaattcattt 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||        ||||||||||||||||| |||||||||    
T  25489249 cttcccacataggactctaccaaattccagatggattggatattgaagttcaggcctgatctagcgaaaaaaattgaggaaagcttttgtcaattcattt 25489150  T
Q  181 gactttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcatagttaactaaaacaccatataa 265  Q
    ||||  |||||||||||||||||||||||| | | |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25489149 gactcagataaaaaccagaatagattataacact-acatacaatgcaaatattcaattttcatagttaactaaaacaccatataa 25489066  T

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Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 82 - 265
Target Start/End: Complemental strand, 24771533 - 24771350
Alignment:
Q  82 cttcccacataggactctaccaaattccagatggattggatattgatattcagacctgatctagcnnnnnnnttgaggaaagcttttgtgaattcatttg 181  Q
    |||||||||||||||| ||||||| |||| ||||||||||| ||||  ||||||| | |||||||       ||||||||||||||||| |||||| |||    
T  24771533 cttcccacataggactttaccaaactccacatggattggattttgaagttcagacattatctagcacaaaaattgaggaaagcttttgtcaattcacttg 24771434  T
Q  182 actttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcatagttaactaaaacaccatataa 265  Q
    |   ||||||||||||||||||  | |||||| | ||| ||||||||||||||||||| | ||||||||| |||||||||||||    
T  24771433 atgctgataaaaaccagaatagtgtgtaaaaactgcatgcaatgcaaatattgaatttacttagttaacttaaacaccatataa 24771350  T

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Target: chr6; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 278 - 361
Target Start/End: Complemental strand, 26146806 - 26146722
Alignment:
Q  278 cataaaacattaaaatacattatccgaggttggcctccat-aatttacatgtacttctaaaatggtattcattctataatctaat 361  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26146806 cataaaacattcaaatacattatccgaggttggcctccatgaatttacatgtacttctaaaatggtattcattctataatctaat 26146722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 284 - 361
Target Start/End: Complemental strand, 25514640 - 25514562
Alignment:
Q  284 acattaaaatacattatccgaggttggcctccat-aatttacatgtacttctaaaatggtattcattctataatctaat 361  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25514640 acattaaaatacattatccgaggttggcctccatgaatttacatgtacttctaaaatggtattcattctataatctaat 25514562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 25548628 - 25548558
Alignment:
Q  279 ataaaacattaaaatacattatccgaggttggcctccataatttacatgtacttctaaaatggtattcatt 349  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25548628 ataaaacattcaaatacattatccgaggttggcctccatattttacatgtacttctaaaatggtattcatt 25548558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 26061410 - 26061341
Alignment:
Q  292 atacattatccgaggttggcctccataatttacatgtacttctaaaatggtattcattctataatctaat 361  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26061410 atacattatccaaggttggcctccataatttacatgtacttctaaaatggtgttcattctataatctaat 26061341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 26081380 - 26081311
Alignment:
Q  292 atacattatccgaggttggcctccataatttacatgtacttctaaaatggtattcattctataatctaat 361  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26081380 atacattatccaaggttggcctccataatttacatgtacttctaaaatggtgttcattctataatctaat 26081311  T

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Target: chr6; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 311 - 361
Target Start/End: Complemental strand, 25986929 - 25986879
Alignment:
Q  311 cctccataatttacatgtacttctaaaatggtattcattctataatctaat 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25986929 cctccataatttacatgtacttctaaaatggtattcattctataatctaat 25986879  T

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Target: chr6; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 25488142 - 25488093
Alignment:
Q  312 ctccataatttacatgtacttctaaaatggtattcattctataatctaat 361  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25488142 ctccataatttacatgtacttctaaaatggtgttcattctataatctaat 25488093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 25548903 - 25548859
Alignment:
Q  34 atcgatccaagcatcagtaccagcttacattctgaaagaacaccc 78  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  25548903 atcgatccaagcatcagtaccaacttacattctgaaagaacaccc 25548859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 17988740 - 17988807
Alignment:
Q  278 cataaaacattaaaatacattatccgaggttggcctccataatttacatgtacttctaaaatggtatt 345  Q
    |||||||| || ||||||||||||| | ||||||||||| |||||||||| ||||||| |||||||||    
T  17988740 cataaaacgttcaaatacattatccaaagttggcctccagaatttacatgaacttctacaatggtatt 17988807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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