View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2133_low_17 (Length: 368)
Name: NF2133_low_17
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2133_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 45121800 - 45121999
Alignment:
| Q |
19 |
catcaaaggctatgtgaactgggcggcttcggttcttgattcttctttatggtatgagaagtagttatgtaatttaattcaattgttcttgaaatatgtc |
118 |
Q |
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| T |
45121800 |
catcaaaggctatgtgaactgggcggcttcggttcttgattcttctttatggtatgagaagcagttatgtaatttaattcaattgttcttgaaatatgtc |
45121899 |
T |
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| Q |
119 |
gggtttattatcttttatattttaatacgtttaattacaatgtcatataacatgcaatgtatataagaatgatcaagggtaaaaaatgttgggcttataa |
218 |
Q |
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| T |
45121900 |
gggtttattatcttttatattttaatacgtttaattacaatgtcatataacatgcaatgtatataagaatgatcaagggtaaaaaatgttgggcttataa |
45121999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 256 - 363
Target Start/End: Original strand, 45122166 - 45122273
Alignment:
| Q |
256 |
atacatattttttactcggtaataaaatctctacactaacattctttttgagcaatattcaagtgcccgagtgttgatattataaatcaatactaagttc |
355 |
Q |
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| T |
45122166 |
atacatattttttactcagtaataaaatctctacactaacattctttttgagcaatattcaagtggccgagtgttgatattataaatcaatgctaagttc |
45122265 |
T |
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| Q |
356 |
atctcact |
363 |
Q |
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| T |
45122266 |
ttctcact |
45122273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 45122028 - 45122085
Alignment:
| Q |
213 |
ttataaaaaatatagtataaatagtttttgcatcagacactgaatacatattttttac |
270 |
Q |
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| T |
45122028 |
ttataaaaaatatagtataaatagtttttgcatcagacactgaatacatattttttac |
45122085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 45122628 - 45122693
Alignment:
| Q |
123 |
ttattatcttttatattttaatacgtttaattacaatgtcatataacatgcaatgtatataagaat |
188 |
Q |
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| T |
45122628 |
ttattatcttttatatttcaatacatttaattgcattgtcatataacatgcgatgtatataagaat |
45122693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 45122692 - 45122750
Alignment:
| Q |
137 |
attttaatacgtttaattacaatgtcatataacatgcaatgtatataagaatgatcaag |
195 |
Q |
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| T |
45122692 |
atttcaatacatttaattgcaatgtcataaaacatgcaaagtatataagaatgatcaag |
45122750 |
T |
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