View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2133_low_19 (Length: 326)

Name: NF2133_low_19
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2133_low_19
NF2133_low_19
[»] chr7 (2 HSPs)
chr7 (24-316)||(43399558-43399852)
chr7 (191-281)||(28165045-28165137)
[»] chr3 (3 HSPs)
chr3 (214-280)||(31337450-31337516)
chr3 (212-269)||(21872318-21872375)
chr3 (213-281)||(24235731-24235799)
[»] chr8 (1 HSPs)
chr8 (193-275)||(29973041-29973125)
[»] chr2 (4 HSPs)
chr2 (210-275)||(11513858-11513923)
chr2 (210-270)||(5043605-5043665)
chr2 (210-281)||(10143126-10143197)
chr2 (210-270)||(33942115-33942175)
[»] chr1 (6 HSPs)
chr1 (212-281)||(33527194-33527263)
chr1 (210-257)||(8130414-8130461)
chr1 (210-268)||(17422983-17423041)
chr1 (212-281)||(25006081-25006150)
chr1 (225-281)||(15360848-15360904)
chr1 (213-281)||(27738228-27738296)
[»] chr4 (4 HSPs)
chr4 (212-275)||(2996533-2996596)
chr4 (206-256)||(42866047-42866097)
chr4 (194-275)||(43371998-43372079)
chr4 (214-275)||(55870390-55870451)
[»] scaffold0024 (1 HSPs)
scaffold0024 (212-281)||(27530-27599)
[»] chr6 (1 HSPs)
chr6 (212-281)||(4006668-4006737)
[»] chr5 (3 HSPs)
chr5 (212-281)||(14295460-14295529)
chr5 (210-251)||(34245708-34245749)
chr5 (213-257)||(18704084-18704128)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 24 - 316
Target Start/End: Original strand, 43399558 - 43399852
Alignment:
Q  24 tgttattttgaattgtatttctgaatattttgtgattaatttggtttaacattctgaacatactttgggtttctttgtattcatttatttcattttatat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  43399558 tgttattttgaattgtatttctgaatattttgtgattaatttggtttaacattctcaacatactttgggtttctttggattcatttatttcattttatat 43399657  T
Q  124 accgacacaagcattgtgaaactat--ttaccagagcttttggaaatagtatattataagctgatccagacttatttccataaactcaatgatagcttat 221  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43399658 accgacacaagcattgtgaaactatatttaccagagcttttggaaatagtatattataagctgatccagacttatttccataaactcaatgatagcttat 43399757  T
Q  222 gaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaatgataaacgcttaattttattttcaataacctttg 316  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43399758 taagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaatgataaacgcttaattttattttcaataacctttg 43399852  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 281
Target Start/End: Complemental strand, 28165137 - 28165045
Alignment:
Q  191 acttatttccataaactca--atgatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 281  Q
    |||||||||||||| |||   |||||||||||| ||||||  ||||||||||| ||||||||  |||||   |||||||||| |||| |||||    
T  28165137 acttatttccataagctctccatgatagcttataaagacagtttatagcttatattaaaacaatttgacttcattttatcttttgttatagaa 28165045  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 31337450 - 31337516
Alignment:
Q  214 tagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttaga 280  Q
    ||||||||||| |||||||||| ||||| | ||||||| |||||  ||||||||||| |||||||||    
T  31337450 tagcttatgaatacaacttataacttatataaaaacagtttgactttattttatcttttgttttaga 31337516  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 21872318 - 21872375
Alignment:
Q  212 gatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatct 269  Q
    ||||||||||||| |||||||||||||||| | |||| |  |||||| ||||||||||    
T  21872318 gatagcttatgaaaacaacttatagcttatatcaaaaaaatttgaccttattttatct 21872375  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 24235731 - 24235799
Alignment:
Q  213 atagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 281  Q
    |||||||||||| |||||||||||||||| || ||| || |||||  ||| ||||||| |||| |||||    
T  24235731 atagcttatgaaaacaacttatagcttatattcaaatagtttgactttatattatcttttgttatagaa 24235799  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 275
Target Start/End: Complemental strand, 29973125 - 29973041
Alignment:
Q  193 ttatttccataaactc--aatgatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgtt 275  Q
    ||||||||||||||||  || ||||||||||||| |||||||||||||||| | |||| || |||||  ||||||| ||| ||||    
T  29973125 ttatttccataaactctcaaggatagcttatgaaaacaacttatagcttatgtgaaaatagtttgactttattttaccttgtgtt 29973041  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 11513923 - 11513858
Alignment:
Q  210 atgatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgtt 275  Q
    ||||||||||||||| |||||||||||||||| | ||||||  |||||  ||||||||||| ||||    
T  11513923 atgatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttatcttttgtt 11513858  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 5043605 - 5043665
Alignment:
Q  210 atgatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatctt 270  Q
    ||||||||||||||| ||||||| |||||||| | ||||||| |||||  |||||||||||    
T  5043605 atgatagcttatgaaaacaacttctagcttatatgaaaacagtttgactttattttatctt 5043665  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 10143197 - 10143126
Alignment:
Q  210 atgatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 281  Q
    ||||||||||||||| | |||||||||||||| | ||||||| |||||   |||||||||| |||| |||||    
T  10143197 atgatagcttatgaaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaa 10143126  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 33942175 - 33942115
Alignment:
Q  210 atgatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatctt 270  Q
    ||||| ||||||||| |||||||||||||||  | ||||||| |||||  |||||||||||    
T  33942175 atgatggcttatgaaaacaacttatagcttacatgaaaacagtttgactttattttatctt 33942115  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 33527194 - 33527263
Alignment:
Q  212 gatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 281  Q
    |||| |||||||| ||| ||||||| |||| | ||||||| ||||| |||||||||||| ||||||||||    
T  33527194 gataacttatgaaaacagcttatagattatatgaaaacagtttgactgtattttatcttttgttttagaa 33527263  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 8130461 - 8130414
Alignment:
Q  210 atgatagcttatgaagacaacttatagcttattttaaaacagcttgac 257  Q
    ||||||||||||||| |||||||||||||||| | ||||||| |||||    
T  8130461 atgatagcttatgaaaacaacttatagcttatgtgaaaacagtttgac 8130414  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 17422983 - 17423041
Alignment:
Q  210 atgatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatc 268  Q
    |||||||| |||||| |||||||||||||||| | ||| |||||||||  |||||||||    
T  17422983 atgatagcatatgaaaacaacttatagcttatatgaaatcagcttgactttattttatc 17423041  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 25006081 - 25006150
Alignment:
Q  212 gatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 281  Q
    ||||||||||||| |||||||||||||||| | ||||||  |||||  ||||||| | |||||| |||||    
T  25006081 gatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttaccgtctgttatagaa 25006150  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 15360904 - 15360848
Alignment:
Q  225 gacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 281  Q
    ||||||||||||||||| | ||||||| |||||  ||||||||||| |||| |||||    
T  15360904 gacaacttatagcttatatgaaaacagtttgactttattttatcttttgttatagaa 15360848  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 27738228 - 27738296
Alignment:
Q  213 atagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 281  Q
    |||||||||||| |||| ||||||||||| | ||||||  |||||  ||||||||||| |||| |||||    
T  27738228 atagcttatgaaaacaaattatagcttatatgaaaacaatttgactttattttatcttttgttgtagaa 27738296  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 2996596 - 2996533
Alignment:
Q  212 gatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgtt 275  Q
    ||||||||||||| |||||||||| ||||| | ||||||  ||||| |||||||||||| ||||    
T  2996596 gatagcttatgaaaacaacttataacttatataaaaacaatttgactgtattttatcttatgtt 2996533  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 42866097 - 42866047
Alignment:
Q  206 ctcaatgatagcttatgaagacaacttatagcttattttaaaacagcttga 256  Q
    ||||| ||||||||||||| |||||||||||||||| | ||||||| ||||    
T  42866097 ctcaaggatagcttatgaaaacaacttatagcttatataaaaacagtttga 42866047  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 275
Target Start/End: Original strand, 43371998 - 43372079
Alignment:
Q  194 tatttccataaactcaatgatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgtt 275  Q
    ||||||||||| |||   |||||||||||||  ||  ||||||||||| | ||||||| ||||| |||||||||||| ||||    
T  43371998 tatttccataagctcttggatagcttatgaaatcagtttatagcttatataaaaacagtttgactgtattttatcttttgtt 43372079  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 55870390 - 55870451
Alignment:
Q  214 tagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgtt 275  Q
    ||||||||||| |||||||||||||||| | ||||||| |||||  ||||| ||||| ||||    
T  55870390 tagcttatgaaaacaacttatagcttatgtgaaaacagtttgactttatttgatcttttgtt 55870451  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 27599 - 27530
Alignment:
Q  212 gatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 281  Q
    ||||| ||||||| ||||||||||| |||| | ||||||  |||||  |||||||||||||||| |||||    
T  27599 gatagtttatgaaaacaacttatagtttatatgaaaacaatttgactttattttatcttctgttatagaa 27530  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 4006737 - 4006668
Alignment:
Q  212 gatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 281  Q
    ||||||||||||| |||||||||||||||| | ||||||  |||||  ||||||||| | |||| |||||    
T  4006737 gatagcttatgaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttatagaa 4006668  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 14295529 - 14295460
Alignment:
Q  212 gatagcttatgaagacaacttatagcttattttaaaacagcttgaccgtattttatcttctgttttagaa 281  Q
    ||||||||| ||| ||| |||||||||||| | ||||||| |||||  ||||||||||| |||| |||||    
T  14295529 gatagcttacgaaaacagcttatagcttatatgaaaacagtttgactttattttatcttttgttatagaa 14295460  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 34245749 - 34245708
Alignment:
Q  210 atgatagcttatgaagacaacttatagcttattttaaaacag 251  Q
    |||||||||||| || |||||||||||||||| |||||||||    
T  34245749 atgatagcttataaaaacaacttatagcttatattaaaacag 34245708  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 18704084 - 18704128
Alignment:
Q  213 atagcttatgaagacaacttatagcttattttaaaacagcttgac 257  Q
    |||||||||||| |||||||||||||||| | |||| ||||||||    
T  18704084 atagcttatgaaaacaacttatagcttatataaaaatagcttgac 18704128  T

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