View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2133_low_20 (Length: 325)
Name: NF2133_low_20
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2133_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 47852054 - 47852365
Alignment:
| Q |
1 |
aatcatatagtagccacaaagattaaacgattatggtataatactacctgataacccaaatcactggcaatttcaatgacactttttcttgtgattccgg |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47852054 |
aatcataaagtagccacaaagattaaacgattatggtataatactacctgataacccaaatcactgccaatttcaatgacactttttcttgtgattccgg |
47852153 |
T |
|
| Q |
101 |
aaagtatggttccactgatagcaggcgttgaaatggttttgccctaagaaattgaaatccaagttagatcgagatcgtttgaccagttgcaaatataaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47852154 |
aaagtatggttccactgatagcaggcgttgaaatggttttgccctaagaaattgaaatccaagttagattgagatcgtttgaccagttgcaaatataaca |
47852253 |
T |
|
| Q |
201 |
gatagaatatagtacatattgagtttcaccaaatcagttagaacatgcacaactaggaaagtaacaattcatgcgattatccgaaaaccagaatttaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47852254 |
gatagaatatagtacatattgagtttcaccaaatcagttagaacatgcacaactaggaaagtaacaattcatgcgattatccgaaaaccagaatttaaat |
47852353 |
T |
|
| Q |
301 |
aaaccctatgct |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
47852354 |
aaaccctatgct |
47852365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University