View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2133_low_25 (Length: 261)

Name: NF2133_low_25
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2133_low_25
NF2133_low_25
[»] chr7 (13 HSPs)
chr7 (16-243)||(4697887-4698114)
chr7 (16-239)||(4863081-4863304)
chr7 (38-222)||(4712784-4712968)
chr7 (16-239)||(4784536-4784759)
chr7 (16-239)||(4816965-4817188)
chr7 (16-227)||(4846734-4846945)
chr7 (46-223)||(4642926-4643103)
chr7 (124-203)||(4671940-4672019)
chr7 (130-223)||(4661110-4661203)
chr7 (90-218)||(4666201-4666329)
chr7 (90-218)||(4630175-4630303)
chr7 (124-223)||(4636157-4636256)
chr7 (127-218)||(4652823-4652914)
[»] chr4 (1 HSPs)
chr4 (55-242)||(18926437-18926624)
[»] chr6 (1 HSPs)
chr6 (123-242)||(5479308-5479427)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 4698114 - 4697887
Alignment:
Q  16 atctcgagtctcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4698114 atctcgagtctcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatct 4698015  T
Q  116 ctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4698014 ctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccttgttg 4697915  T
Q  216 agaacccggtttcaaacgttttattgct 243  Q
    ||||||||||||||||||||||||||||    
T  4697914 agaacccggtttcaaacgttttattgct 4697887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 4863081 - 4863304
Alignment:
Q  16 atctcgagtctcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatct 115  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||||||||||||||||    
T  4863081 atctcaagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatct 4863180  T
Q  116 ctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttg 215  Q
    |  |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| |||||||||||||| |||| ||| |||||    
T  4863181 cctcaccttcgttgcaatatccaatgagagaaaccaagtgaatatgacgaagctgagagagtaattcgatctcattcatgaactcatttataccttgttg 4863280  T
Q  216 agaacccggtttcaaacgttttat 239  Q
    |||||| ||||| | |||||||||    
T  4863281 agaacctggtttaagacgttttat 4863304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 4712968 - 4712784
Alignment:
Q  38 taagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatctctgcaccttcgttgcaatatcc 137  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||| ||||| ||||||||||||||| |||| |||||||||||    
T  4712968 taagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatcttcattgcaatatcc 4712869  T
Q  138 aatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaaccc 222  Q
    |||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| || |||| ||| ||| ||||||||    
T  4712868 aatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaaccc 4712784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 4784759 - 4784536
Alignment:
Q  16 atctcgagtctcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatct 115  Q
    ||||| || |||| |||||| |||||||||| |||||| || ||||| ||||||||||  ||| ||||||||| ||||||||| ||||||||||||||||    
T  4784759 atctcaagcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaacgagaatcatct 4784660  T
Q  116 ctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttg 215  Q
    || ||||||| |||||||||||||| || |||||||||||||| |||||||| |||||||||||||| || ||||||| ||||||||| ||||| |||||    
T  4784659 ctacaccttcattgcaatatccaataagtgaaaccaagtgaatatgacgaagctgagagagcaactcaatctcattcaagaactcgttcacaccttgttg 4784560  T
Q  216 agaacccggtttcaaacgttttat 239  Q
    |||||| ||||| | |||||||||    
T  4784559 agaacctggtttaagacgttttat 4784536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 4817188 - 4816965
Alignment:
Q  16 atctcgagtctcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatct 115  Q
    ||||| || |||| |||||| |||||||||| |||||| || ||||| ||||||||||  ||| ||||||||| ||||||||| ||||||||||||||||    
T  4817188 atctcaagcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaacgagaatcatct 4817089  T
Q  116 ctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttg 215  Q
    || ||||||| |||||||||||||| || |||||||||||||| |||||||| |||||||||||||| || ||||||| ||||||||| ||||| |||||    
T  4817088 ctacaccttcattgcaatatccaataagtgaaaccaagtgaatatgacgaagctgagagagcaactcaatctcattcaagaactcgttaacaccttgttg 4816989  T
Q  216 agaacccggtttcaaacgttttat 239  Q
    |||||| ||||| | |||||||||    
T  4816988 agaaccaggtttaagacgttttat 4816965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 4846945 - 4846734
Alignment:
Q  16 atctcgagtctcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatct 115  Q
    ||||||||||| |  |||||  |||||||||| ||||||||||||||||||| |||||  ||||| ||||||| ||||||||| ||||| ||||||||||    
T  4846945 atctcgagtctttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagtaccacgttgcatgaagtcataaactagaatcatct 4846846  T
Q  116 ctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttg 215  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||||| |||||||||||||||||| || |||| ||| | | |    
T  4846845 ctgcatcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgatttcattcatgaattcatttagaccttatcg 4846746  T
Q  216 agaacccggttt 227  Q
    ||||||||||||    
T  4846745 agaacccggttt 4846734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 223
Target Start/End: Original strand, 4642926 - 4643103
Alignment:
Q  46 tcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatctctgcaccttcgttgcaatatccaatgagag 145  Q
    |||||||  |||||||| ||||| |||| |||||| ||  | | |||||| || ||||| | |||||||||||   | |||||||||||||| | ||| |    
T  4642926 tcgttattagaaccataaagatactcacaaagagtaccgtgctgcatgaactcataaaccaaaatcatctctgtgtcatcgttgcaatatcccacgaggg 4643025  T
Q  146 aaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaacccg 223  Q
    | |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||  |||| |||||||| ||||    
T  4643026 acaccaagtgaatgtggcgaagctgggagagcaactcgatttcattcatgaactcgttggcaccttgttgagagcccg 4643103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 4671940 - 4672019
Alignment:
Q  124 tcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtt 203  Q
    |||| ||||||||||| ||| || |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||    
T  4671940 tcgtcgcaatatccaacgagggataccaagtgaatgtggcgaagttgagagagtaactcgatttcgttcatgaactcgtt 4672019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 4661110 - 4661203
Alignment:
Q  130 caatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaacccg 223  Q
    |||||||| ||||| || ||||| |||||||| ||||| || ||||||||||||||||| |||||||||||||| ||||| |||||||| ||||    
T  4661110 caatatcccatgagggacaccaaatgaatgtggcgaagctgggagagcaactcgatttcgttcatgaactcgttgacaccttgttgagagcccg 4661203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 4666201 - 4666329
Alignment:
Q  90 catgaagtcgtaaacgagaatcatctctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttca 189  Q
    |||||| || ||||| |||||||||||||   | || ||||||||||| |  || || |||||||||||||| ||||| ||||||||||| ||||||||     
T  4666201 catgaactcataaaccagaatcatctctgtgtcgtcattgcaatatcccacaagggataccaagtgaatgtggcgaagctgagagagcaattcgatttcg 4666300  T
Q  190 ttcatgaactcgtttacaccctgttgaga 218  Q
    ||||||||||||||  |||| ||||||||    
T  4666301 ttcatgaactcgttggcaccttgttgaga 4666329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 4630175 - 4630303
Alignment:
Q  90 catgaagtcgtaaacgagaatcatctctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttca 189  Q
    |||||| || ||||| |||||||||||||     || ||||||||||| |  || || |||||||||||||| ||||| || |||||||||||||||||     
T  4630175 catgaactcataaaccagaatcatctctgtgttgtcattgcaatatcctacaagggacaccaagtgaatgtggcgaagctgggagagcaactcgatttcg 4630274  T
Q  190 ttcatgaactcgtttacaccctgttgaga 218  Q
    ||||||||||||||  |||| ||||||||    
T  4630275 ttcatgaactcgttggcaccttgttgaga 4630303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 4636157 - 4636256
Alignment:
Q  124 tcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaacccg 223  Q
    |||||||||||||| |  || || |||||||||||||| ||||| || |||||||||||||| || ||||||||||| ||| |||| |||||||| ||||    
T  4636157 tcgttgcaatatcccacaagggataccaagtgaatgtggcgaagctgggagagcaactcgatctcgttcatgaactcatttgcaccttgttgagagcccg 4636256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 4652823 - 4652914
Alignment:
Q  127 ttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgaga 218  Q
    ||||||||||| | ||| || |||||||||||||| ||||| || ||||| |||||||| |||||||||||||||||  |||| ||||||||    
T  4652823 ttgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaactcgatctcattcatgaactcgttggcaccttgttgaga 4652914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 55 - 242
Target Start/End: Complemental strand, 18926624 - 18926437
Alignment:
Q  55 gaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatctctgcaccttcgttgcaatatccaatgagagaaaccaagt 154  Q
    |||||||| ||||| |||| |||||| ||||||| |||||| || ||||  ||||||||||||       ||||||| || || | ||| || ||||  |    
T  18926624 gaaccatatagatactcacaaagagtaccacgttgcatgaactcataaatcagaatcatctctttgttgccgttgcagtacccgacgagggataccagat 18926525  T
Q  155 gaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaacccggtttcaaacgttttattgc 242  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||  | || |||||||| || ||||| | ||||||||||||    
T  18926524 gaatgtggcgaagttgagagagcaactcgatctcattcatgaactcgttggccccttgttgagagcctggtttgagacgttttattgc 18926437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 242
Target Start/End: Complemental strand, 5479427 - 5479308
Alignment:
Q  123 ttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaaccc 222  Q
    ||||||||| || ||||| | |||||| |  ||||| |||||||| |  |||||||  ||||||||||| |||||||| ||| |||| ||||| ||||||    
T  5479427 ttcgttgcagtaaccaatcaaagaaacaagatgaatatgacgaagcttcgagagcatgtcgatttcattgatgaactcattttcaccttgttgtgaaccc 5479328  T
Q  223 ggtttcaaacgttttattgc 242  Q
    ||||| |  |||||||||||    
T  5479327 ggtttaagccgttttattgc 5479308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University