View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2133_low_27 (Length: 250)
Name: NF2133_low_27
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2133_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 48 - 240
Target Start/End: Complemental strand, 28846367 - 28846175
Alignment:
| Q |
48 |
aattgtccaacatctaaacaatttttaccatttgtttcatggtgcctataaaatgtgttttatttttactcaattttgcacatatcaaatggatcccaat |
147 |
Q |
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| T |
28846367 |
aattgtccaacatctaaacaatttttaccgtttgtttcatggtgcctataaaatgtgttttatttttactcaattttgcacatatcaaatggatcccaat |
28846268 |
T |
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| Q |
148 |
caattcaattgggaagcttattttcactatatgcaaaattatcaacatcctccaataaatgaaaattctcaaaatcctccattttttcctatg |
240 |
Q |
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| T |
28846267 |
caatttaattggcaagcttattttcactatatgcaaaattatcaacatcctcttataaatgaaaattctcaaaatcctccattttttcctatg |
28846175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 28846478 - 28846427
Alignment:
| Q |
1 |
ttggaaaggcatgtagaattaatttttgaccatgttttaggcctgtaaattg |
52 |
Q |
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| T |
28846478 |
ttggaaaggcatgtagaattaatttttgtccattttttaggcctgtaaattg |
28846427 |
T |
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