View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2133_low_3 (Length: 593)

Name: NF2133_low_3
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2133_low_3
NF2133_low_3
[»] chr5 (8 HSPs)
chr5 (1-589)||(29712631-29713219)
chr5 (262-492)||(29687640-29687870)
chr5 (242-483)||(29695721-29695962)
chr5 (287-356)||(42562726-42562795)
chr5 (291-353)||(1812043-1812105)
chr5 (538-579)||(42562506-42562547)
chr5 (531-571)||(29696064-29696104)
chr5 (292-353)||(178638-178699)
[»] chr1 (5 HSPs)
chr1 (292-390)||(24309796-24309894)
chr1 (278-353)||(24322067-24322142)
chr1 (291-416)||(24340032-24340157)
chr1 (292-350)||(24415456-24415514)
chr1 (305-353)||(24366787-24366835)
[»] chr8 (5 HSPs)
chr8 (291-414)||(15348480-15348603)
chr8 (268-354)||(12199902-12199988)
chr8 (268-354)||(12444330-12444416)
chr8 (268-354)||(12194896-12194982)
chr8 (268-354)||(12439324-12439410)
[»] chr4 (35 HSPs)
chr4 (274-389)||(48156789-48156904)
chr4 (291-402)||(48862859-48862973)
chr4 (295-414)||(7774166-7774285)
chr4 (291-416)||(48735647-48735775)
chr4 (297-414)||(7877344-7877461)
chr4 (298-386)||(7904657-7904745)
chr4 (277-387)||(45366582-45366695)
chr4 (275-386)||(48148047-48148161)
chr4 (274-389)||(45372419-45372534)
chr4 (298-381)||(49044599-49044682)
chr4 (295-387)||(7771026-7771118)
chr4 (297-357)||(49048993-49049053)
chr4 (295-389)||(7907947-7908041)
chr4 (292-354)||(33134223-33134285)
chr4 (291-389)||(48891027-48891125)
chr4 (291-388)||(7765239-7765336)
chr4 (293-353)||(48870162-48870222)
chr4 (293-353)||(48885848-48885908)
chr4 (295-354)||(7813102-7813161)
chr4 (295-354)||(7822591-7822650)
chr4 (298-389)||(49041500-49041591)
chr4 (295-387)||(7789711-7789803)
chr4 (298-385)||(7238086-7238173)
chr4 (295-354)||(7800259-7800318)
chr4 (299-354)||(33133663-33133718)
chr4 (291-402)||(48170935-48171049)
chr4 (301-386)||(48875474-48875559)
chr4 (298-394)||(37827351-37827447)
chr4 (293-356)||(48898342-48898405)
chr4 (295-350)||(48902572-48902627)
chr4 (533-570)||(7771261-7771298)
chr4 (295-388)||(7786065-7786158)
chr4 (533-570)||(7904890-7904927)
chr4 (538-570)||(7774010-7774042)
chr4 (538-570)||(7789951-7789983)
[»] scaffold0508 (1 HSPs)
scaffold0508 (291-390)||(11880-11979)
[»] chr6 (1 HSPs)
chr6 (291-393)||(21015394-21015496)
[»] chr3 (5 HSPs)
chr3 (291-354)||(11024934-11024997)
chr3 (295-354)||(11006359-11006418)
chr3 (291-354)||(11015922-11015985)
chr3 (295-354)||(47452304-47452363)
chr3 (532-576)||(47452085-47452129)


Alignment Details
Target: chr5 (Bit Score: 569; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Complemental strand, 29713219 - 29712631
Alignment:
Q  1 aacggaaggaagagcaagatactgccctctcatactcctaaaatattggtgatagactctttcaaaggagacataactttcaaaacgaattcatgagcgg 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29713219 aacggaaggaagagcaagatacttccctctcatactcctaaaatattggtgatagactctttcaaaggagacataactttcaaaaccaattcatgagcgg 29713120  T
Q  101 aagtaggaataaaatataaatggcaaatgcgtctttatcatcctaccaacatagtaaagggttgaaaacctaacttaaaaatcaaagtgatccgaaacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29713119 aagtaggaataaaatataaatggcaaatgcgtctttatcatcctaccaacatagtaaagggttgaaaacctaacctaaaaatcaaagtgatccgaaacaa 29713020  T
Q  201 tattggcaaaggaggaaacgtgtgaatggagacgatgaagaagacagagcaatatctatctattgagttaatcattcaaatccttttaatgttaccggtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29713019 tattggcaaaggaggaaacgtgtgaatggagacgatgaagaagacagagcaatatctatctattgagttaatcattcaaatccttttaatgttaccggtg 29712920  T
Q  301 aagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttactgccaaaacac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29712919 aagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttaccgccaaaacac 29712820  T
Q  401 acgctcctagaattctattgataactccaaatctggaatctctatctattgatttggaaacatcactctacgatgatagtgcttcctattcattgaatat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712819 acgctcctagaattctattgataactccaaatctggaatctctatctattgatttggaaacatcactctacgatgatagtgcttcctattcattgaatat 29712720  T
Q  501 taattttttgcttccacagtcttttacacaacttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatctctct 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29712719 taattttttgcttccacagtcttttacacaacttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctct 29712631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 262 - 492
Target Start/End: Original strand, 29687640 - 29687870
Alignment:
Q  262 attgagttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctg 361  Q
    ||||| || ||||||||||||||| ||| |||||| |||||||||||||| || |||||||| ||||||||||  ||||||||||| || |||||| ||     
T  29687640 attgaattgatcattcaaatccttctaaagttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctc 29687739  T
Q  362 atttcgcaaattcacattttcaacttactgccaaaacacacgctcctagaattctattgataactccaaatctggaatctctatctattgatttggaaac 461  Q
    | || |||||||| |||||||||||||| |||||  ||||| ||||||||||||| || |||| |||| |||| |||||||||||||| ||||| |||||    
T  29687740 actttgcaaattctcattttcaacttaccgccaatgcacacactcctagaattctgttcataaatccagatcttgaatctctatctatagattttgaaac 29687839  T
Q  462 atcactctacgatgatagtgcttcctattca 492  Q
    ||| ||  |||||||||||||||| ||||||    
T  29687840 atcgcttcacgatgatagtgcttcttattca 29687870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 242 - 483
Target Start/End: Original strand, 29695721 - 29695962
Alignment:
Q  242 agacagagcaatatctatctattgagttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggtt 341  Q
    ||||||||  ||||||  || |||||||||||||||||||||| |||| |||||| || |||||||||||||||||||| ||||||||||||||||||||    
T  29695721 agacagagacatatcttccttttgagttaatcattcaaatcctattaaggttaccagtcaagtctcttattcgtttcaaatgcgtttgtaagttatggtt 29695820  T
Q  342 ttctcttatctctcaatctgatttcgcaaattcacattttcaacttactgccaaaacacacgctcctagaattctattgataactccaaatctggaatct 441  Q
     |||||||| |||||| || | || |||||||||||||||||||||||  ||   |||||| |   ||||||| | |||||||||||| ||||  |||||    
T  29695821 atctcttatatctcaacctcactttgcaaattcacattttcaacttaccaccgctacacacacgaatagaattatgttgataactccatatcttcaatct 29695920  T
Q  442 ctatctattgatttggaaacatcactctacgatgatagtgct 483  Q
    |||||||| ||| | |||  ||| ||  ||||||||||||||    
T  29695921 ctatctatagatcttgaattatcgcttaacgatgatagtgct 29695962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 42562795 - 42562726
Alignment:
Q  287 taatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca 356  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||  ||||||||||| ||||||||    
T  42562795 taatgttaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttctctaatctctca 42562726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 1812043 - 1812105
Alignment:
Q  291 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 353  Q
    |||||| ||||||| ||| || |||| ||| || |||||||||||||||||||||||||||||    
T  1812043 gttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctc 1812105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 579
Target Start/End: Complemental strand, 42562547 - 42562506
Alignment:
Q  538 attaaaggttcgtgtagagggtttatacttttgagttgtggt 579  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  42562547 attaaaggttcgtgtagagggtttatacttttgcattgtggt 42562506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 531 - 571
Target Start/End: Original strand, 29696064 - 29696104
Alignment:
Q  531 acttgatattaaaggttcgtgtagagggtttatacttttga 571  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  29696064 acttgattttaaaggttcgtgtagaggctttatacttttga 29696104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 178638 - 178699
Alignment:
Q  292 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 353  Q
    ||||| || |||||||||||||||||||| || ||||||||||  ||||| ||||| |||||    
T  178638 ttaccagttaagtctcttattcgtttcaaatgtgtttgtaagtcttggttatctctcatctc 178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 292 - 390
Target Start/End: Original strand, 24309796 - 24309894
Alignment:
Q  292 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttact 390  Q
    |||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||| | ||| | || ||||||||||||||||||||||||    
T  24309796 ttaccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatctctgattctcactttgcaaattcacattttcaacttact 24309894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 278 - 353
Target Start/End: Original strand, 24322067 - 24322142
Alignment:
Q  278 aaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 353  Q
    |||||||| ||| ||| | |||||||||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  24322067 aaatccttctaaggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 24322142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 291 - 416
Target Start/End: Original strand, 24340032 - 24340157
Alignment:
Q  291 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttact 390  Q
    ||||||||| |||||||||||||||||||| |  |||||||||| ||||||||| ||||||||| |   | | || ||||||||||| |||||| |||||    
T  24340032 gttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttatctctgataatcactttgcaaattcacactttcaagttact 24340131  T
Q  391 gccaaaacacacgctcctagaattct 416  Q
    ||   ||||||| ||| |||||||||    
T  24340132 gctgcaacacacactcttagaattct 24340157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 24415456 - 24415514
Alignment:
Q  292 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttat 350  Q
    |||||||| |||||||||||||||||||| |||||| ||||||  ||||||||||||||    
T  24415456 ttaccggttaagtctcttattcgtttcaaatgcgttcgtaagtcttggttttctcttat 24415514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 24366787 - 24366835
Alignment:
Q  305 ctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 353  Q
    |||| ||||||||||| || ||||| |||| ||||||||||||||||||    
T  24366787 ctctgattcgtttcaaatgtgtttgcaagtcatggttttctcttatctc 24366835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 291 - 414
Target Start/End: Original strand, 15348480 - 15348603
Alignment:
Q  291 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttact 390  Q
    ||||||||||||||||||||| |||||||| |||||||||||||  |||||||||||||||||| |  || | ||||||||||||||||||||| ||||     
T  15348480 gttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattacc 15348579  T
Q  391 gccaaaacacacgctcctagaatt 414  Q
    |||  ||||||| ||| |||||||    
T  15348580 gccgcaacacacactcgtagaatt 15348603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 12199902 - 12199988
Alignment:
Q  268 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 354  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| || |||||||||| |||||||||||||||||||    
T  12199902 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 12199988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 12444330 - 12444416
Alignment:
Q  268 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 354  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| || |||||||||| |||||||||||||||||||    
T  12444330 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 12444416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 12194896 - 12194982
Alignment:
Q  268 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 354  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| ||| ||||||||| |||||| ||||||||||||    
T  12194896 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctct 12194982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 12439324 - 12439410
Alignment:
Q  268 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 354  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| ||| ||||||||| |||||| ||||||||||||    
T  12439324 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctct 12439410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 274 - 389
Target Start/End: Complemental strand, 48156904 - 48156789
Alignment:
Q  274 attcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaatt 373  Q
    |||||||||||||||  ||||||||||||||||||| | ||||||||||||||||||||||  |||||||||||||||||  |  || |||| |||||||    
T  48156904 attcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatctccgatactcattttgcaaatt 48156805  T
Q  374 cacattttcaacttac 389  Q
    | ||||||||| ||||    
T  48156804 ctcattttcaaattac 48156789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 291 - 402
Target Start/End: Original strand, 48862859 - 48862973
Alignment:
Q  291 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca--at-ctgatttcgcaaattcacattttcaactt 387  Q
    |||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||  || || | || |||||||||||||||||||||    
T  48862859 gttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctctcatgatcctcactttgcaaattcacattttcaactt 48862958  T
Q  388 actgccaaaacacac 402  Q
    ||||||  |||||||    
T  48862959 actgccgcaacacac 48862973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 295 - 414
Target Start/End: Complemental strand, 7774285 - 7774166
Alignment:
Q  295 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttactgcca 394  Q
    ||||||||||||||||||| |||||| || ||||||||| |||||||||||||||||||| |  |  |||| |||||||||||||||||||| ||  |||    
T  7774285 ccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatctctgatccccattttgcaaattcacattttcaactcaccacca 7774186  T
Q  395 aaacacacgctcctagaatt 414  Q
     ||| ||| |||||||||||    
T  7774185 caacgcacactcctagaatt 7774166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 291 - 416
Target Start/End: Complemental strand, 48735775 - 48735647
Alignment:
Q  291 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc---tcaatctgatttcgcaaattcacattttcaactt 387  Q
    |||||||||||||||||||||||||||||| || ||||||||||  |||||||||||||||||   | |  ||||||| ||||||||||||||| || ||    
T  48735775 gttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctcctgtgatactgattttgcaaattcacattttgaaatt 48735676  T
Q  388 actgccaaaacacacgctcctagaattct 416  Q
    || |||| ||| ||| ||| |||||||||    
T  48735675 accgccataacccacactcgtagaattct 48735647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 297 - 414
Target Start/End: Original strand, 7877344 - 7877461
Alignment:
Q  297 ggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttactgccaaa 396  Q
    ||||||||||||||| |||||||| ||| |||||||| |||||||||||||||||||| |  |  |||| |||||||||||||||||||| ||  ||| |    
T  7877344 ggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatctctgatcccaattttgcaaattcacattttcaactcaccaccaca 7877443  T
Q  397 acacacgctcctagaatt 414  Q
    || ||| |||||||||||    
T  7877444 acgcacactcctagaatt 7877461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 298 - 386
Target Start/End: Original strand, 7904657 - 7904745
Alignment:
Q  298 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaact 386  Q
    |||||||||||||| |||||||| || |||||||||||||||||||||||||||||| |  || | || ||||||||||||||||||||    
T  7904657 gtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatctctgatcctcactttgcaaattcacattttcaact 7904745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 277 - 387
Target Start/End: Complemental strand, 45366695 - 45366582
Alignment:
Q  277 caaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctc---aatctgatttcgcaaatt 373  Q
    ||||||||  ||| |||||| |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||   | ||  | || |||||||    
T  45366695 caaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctctcgtgattcacactttgcaaatt 45366596  T
Q  374 cacattttcaactt 387  Q
    ||||||||||||||    
T  45366595 cacattttcaactt 45366582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 275 - 386
Target Start/End: Complemental strand, 48148161 - 48148047
Alignment:
Q  275 ttcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca--at-ctgatttcgcaaa 371  Q
    |||||||||||| || |||||| ||||||||||||||||||||||| || || |||||||  ||||||||||||||||||||  || || | ||||||||    
T  48148161 ttcaaatcctttcaaggttaccagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctctcatgatcctcacttcgcaaa 48148062  T
Q  372 ttcacattttcaact 386  Q
    |||||||||| ||||    
T  48148061 ttcacattttgaact 48148047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 274 - 389
Target Start/End: Complemental strand, 45372534 - 45372419
Alignment:
Q  274 attcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaatt 373  Q
    |||||||| ||  ||| ||| ||||||||||||||||| |||||||| || ||||||||||  ||||||||| |||||||| |  || |||| |||||||    
T  45372534 attcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctgatcctcattttgcaaatt 45372435  T
Q  374 cacattttcaacttac 389  Q
    ||||||||||| ||||    
T  45372434 cacattttcaaattac 45372419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 298 - 381
Target Start/End: Complemental strand, 49044682 - 49044599
Alignment:
Q  298 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacatttt 381  Q
    |||| ||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| |  | || |||||||||||||||    
T  49044682 gtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaaacccactttgcaaattcacatttt 49044599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 7771026 - 7771118
Alignment:
Q  295 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaactt 387  Q
    |||||||||||||||||  ||||||| |||||||||||||  |||||||||||||||||| |  || | || | |||||||||||||||||||    
T  7771026 ccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcctcactttgaaaattcacattttcaactt 7771118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 49049053 - 49048993
Alignment:
Q  297 ggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaa 357  Q
    ||||| ||||||| | ||||||||||| |||||||||||||||||||||||||||||||||    
T  49049053 ggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaa 49048993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 295 - 389
Target Start/End: Original strand, 7907947 - 7908041
Alignment:
Q  295 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttac 389  Q
    ||||||||||||||||  ||||||||||  ||| |||||| |||||||||||||||||||    |  |||| |||||||||||||||||||||||    
T  7907947 ccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctctgctccccattttgcaaattcacattttcaacttac 7908041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 292 - 354
Target Start/End: Complemental strand, 33134285 - 33134223
Alignment:
Q  292 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 354  Q
    ||||||||||||||||||||||||||||| ||||||||||||   || |||||||||||||||    
T  33134285 ttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttatctct 33134223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 291 - 389
Target Start/End: Original strand, 48891027 - 48891125
Alignment:
Q  291 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttac 389  Q
    |||| |||| ||||||||||| |||||||| |||||||||||||  |||||||||||| ||||  |  || |||| |||||||| ||||||||||||||    
T  48891027 gttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttac 48891125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 388
Target Start/End: Original strand, 7765239 - 7765336
Alignment:
Q  291 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaactta 388  Q
    ||||||||||||||||||  |   |||||||||| |||||||||||||||||||| |||||||| |  || | || |||||||||||||| |||||||    
T  7765239 gttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcactttgcaaattcacatttccaactta 7765336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 48870162 - 48870222
Alignment:
Q  293 taccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 353  Q
    |||||||||| ||||||||||||||||| |||||||||||||  ||||||| |||||||||    
T  48870162 taccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc 48870222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 48885848 - 48885908
Alignment:
Q  293 taccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 353  Q
    |||||||||| ||||||||||||||||| |||||||||||||  ||||||| |||||||||    
T  48885848 taccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc 48885908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 7813102 - 7813161
Alignment:
Q  295 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 354  Q
    |||||||||| |||||| ||||||||||| |||||||| | |||||||||||||||||||    
T  7813102 ccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctct 7813161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 7822591 - 7822650
Alignment:
Q  295 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 354  Q
    |||||||||| |||||| ||||||||||| |||||||| | |||||||||||||||||||    
T  7822591 ccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctct 7822650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 389
Target Start/End: Complemental strand, 49041591 - 49041500
Alignment:
Q  298 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttac 389  Q
    ||||||||||||||| ||||||| |||||||| ||||  |||||||||||||||||| |  |  |||| |||||||| |||||| |||||||    
T  49041591 gtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttatctctgatccccattttgcaaattctcatttttaacttac 49041500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 7789711 - 7789803
Alignment:
Q  295 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaactt 387  Q
    |||||||||||||||||  ||||||| |||||||||||||  ||||||||| |||||||  |  || | || | |||||||||||||||||||    
T  7789711 ccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatctccgatcctcactttgaaaattcacattttcaactt 7789803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 298 - 385
Target Start/End: Complemental strand, 7238173 - 7238086
Alignment:
Q  298 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaac 385  Q
    ||||||||||||||  ||||||| || ||||||||||  |||||||||||||||||| |  || | || |||||||||||||| ||||    
T  7238173 gtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttatctctgaccctcactttgcaaattcacatttccaac 7238086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 7800259 - 7800318
Alignment:
Q  295 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 354  Q
    |||||||||| |||||| ||||||||||| |||||||| | ||||||||||||| |||||    
T  7800259 ccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctct 7800318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 354
Target Start/End: Original strand, 33133663 - 33133718
Alignment:
Q  299 tgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 354  Q
    |||||||||||||||||||||| | | |||||||| | ||||||||||||||||||    
T  33133663 tgaagtctcttattcgtttcaaattcatttgtaagctttggttttctcttatctct 33133718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 291 - 402
Target Start/End: Complemental strand, 48171049 - 48170935
Alignment:
Q  291 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca--at-ctgatttcgcaaattcacattttcaactt 387  Q
    |||| |||||||||||||| | |||||||| || ||||||||||  |||||| |||||||||||||  || || | || |||||||| ||||||||| ||    
T  48171049 gttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctctcatgatcctcactttgcaaattcgcattttcaaatt 48170950  T
Q  388 actgccaaaacacac 402  Q
    || ||| ||||||||    
T  48170949 accgcctaaacacac 48170935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 301 - 386
Target Start/End: Original strand, 48875474 - 48875559
Alignment:
Q  301 aagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaact 386  Q
    |||||||| ||||||||||| |||||||| ||||  ||||||||||| |||||  || |  ||||  |||||||||||||||||||    
T  48875474 aagtctctaattcgtttcaaatgcgtttgcaagtcttggttttctctcatctccgaaccccattttacaaattcacattttcaact 48875559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 394
Target Start/End: Complemental strand, 37827447 - 37827351
Alignment:
Q  298 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttactgcca 394  Q
    ||||||||||||||  |||| |  ||||||||||||| ||||||  ||||||| ||| |  | || || ||||||||||||||||||||||| ||||    
T  37827447 gtgaagtctcttataagttttacatgcgtttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaacttacggcca 37827351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 48898342 - 48898405
Alignment:
Q  293 taccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca 356  Q
    |||| |||||||||||||  ||||||||||| ||||||||||  ||||| || |||||||||||    
T  48898342 tacctgtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctca 48898405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 350
Target Start/End: Original strand, 48902572 - 48902627
Alignment:
Q  295 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttat 350  Q
    ||||| |||||||| ||||||||||| || ||||||||||  ||||||||||||||    
T  48902572 ccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttat 48902627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 570
Target Start/End: Original strand, 7771261 - 7771298
Alignment:
Q  533 ttgatattaaaggttcgtgtagagggtttatacttttg 570  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7771261 ttgaaattagaggttcgtgtagagggtttatacttttg 7771298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 388
Target Start/End: Original strand, 7786065 - 7786158
Alignment:
Q  295 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaactta 388  Q
    |||||||| ||||||||    ||||| |||||||||||| ||||| ||||| |||||||| |  || | || |||||||||||||| |||||||    
T  7786065 ccggtgaaatctcttatattgttcaaatgcgtttgtaagctatggatttctattatctctgatcctcaatttgcaaattcacatttccaactta 7786158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 570
Target Start/End: Original strand, 7904890 - 7904927
Alignment:
Q  533 ttgatattaaaggttcgtgtagagggtttatacttttg 570  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7904890 ttgaaattagaggttcgtgtagagggtttatacttttg 7904927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 538 - 570
Target Start/End: Complemental strand, 7774042 - 7774010
Alignment:
Q  538 attaaaggttcgtgtagagggtttatacttttg 570  Q
    |||| ||||||||||||||||||||||||||||    
T  7774042 attagaggttcgtgtagagggtttatacttttg 7774010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 538 - 570
Target Start/End: Original strand, 7789951 - 7789983
Alignment:
Q  538 attaaaggttcgtgtagagggtttatacttttg 570  Q
    |||| ||||||||||||||||||||||||||||    
T  7789951 attagaggttcgtgtagagggtttatacttttg 7789983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 291 - 390
Target Start/End: Original strand, 11880 - 11979
Alignment:
Q  291 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttact 390  Q
    ||||||| | ||||||||||| |||||||| | ||||||||||| ||||||||||||||||||| |   | | || ||||||||||||||||||||||||    
T  11880 gttaccgattaagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatctctgataatcactttgcaaattcacattttcaacttact 11979  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 291 - 393
Target Start/End: Original strand, 21015394 - 21015496
Alignment:
Q  291 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttact 390  Q
    ||||||||| | ||||||| | ||||||||||| ||||||||||||| ||||||||||||||||||| |  | || |||| |||||||||| || |||||    
T  21015394 gttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatctctcaaacccactttgcaatttcacattttgaaattact 21015493  T
Q  391 gcc 393  Q
    |||    
T  21015494 gcc 21015496  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 11024997 - 11024934
Alignment:
Q  291 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 354  Q
    |||||||||||||||||| || |||||||| ||||||||||||| ||||||  |||||||||||    
T  11024997 gttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctct 11024934  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 11006418 - 11006359
Alignment:
Q  295 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 354  Q
    ||||||||||| ||||| ||||||||||| |||||||||| ||||||  |||||||||||    
T  11006418 ccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctct 11006359  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 11015985 - 11015922
Alignment:
Q  291 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 354  Q
    |||||||||||||||||| || |||||||| ||||||||||||| || |||  |||||||||||    
T  11015985 gttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcattgttagctcttatctct 11015922  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 47452363 - 47452304
Alignment:
Q  295 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 354  Q
    ||||||||||||||| | || ||||||||| ||| ||||| |||||||||||||||||||    
T  47452363 ccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctct 47452304  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 532 - 576
Target Start/End: Complemental strand, 47452129 - 47452085
Alignment:
Q  532 cttgatattaaaggttcgtgtagagggtttatacttttgagttgt 576  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||||    
T  47452129 cttgaaattaaaggttcatgtagagggtttatacttttaagttgt 47452085  T

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