View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2133_low_31 (Length: 243)
Name: NF2133_low_31
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2133_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 1109405 - 1109635
Alignment:
| Q |
1 |
caaatttctctgcaccatagcgccgctatgtaacaacactttcgtataaaatatcaaaaccaaataaaaaacagctttaggacatgaaaattaacaacgg |
100 |
Q |
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| T |
1109405 |
caaatttctctgcaccatagcgccgctatgtaacaacactttcgtataaaatatcaaaaccaaataaaaaaaagctttaggacatgaaaattaacaacgg |
1109504 |
T |
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| Q |
101 |
tttagattttaaactatcaaaagtagca-aatcatagcaaattttaaggcaggaatttgtagcatataagaatgagaagaacaatttcttacttcttgaa |
199 |
Q |
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| T |
1109505 |
tttagattttaaactatcaaaagtagcataatcatagaaaattttaaggcaggaatttgtagcatataagaatgtgaagaacaatttcttacttcttgaa |
1109604 |
T |
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| Q |
200 |
ggcaattagatagaagtgaggcggatgatgt |
230 |
Q |
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| T |
1109605 |
ggcaattagatagaagtgagacggttgatgt |
1109635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 1093137 - 1093207
Alignment:
| Q |
160 |
agcatataagaatgagaagaacaatttcttacttcttgaaggcaattagatagaagtgaggcggatgatgt |
230 |
Q |
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||||||| |||| ||||||||| |||||||||||||||||| ||||||||||||||||| ||| |||||| |
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| T |
1093137 |
agcatatgagaaagagaagaaccatttcttacttcttgaagaaaattagatagaagtgagacggttgatgt |
1093207 |
T |
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