View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2133_low_35 (Length: 214)
Name: NF2133_low_35
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2133_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 53491223 - 53491408
Alignment:
| Q |
13 |
aacctgtgaaaaattgaagtgatttatttggtatctcattgaacataaacagtagaagcaaaatgacatatgtaagaatataagagcaacaacaagacaa |
112 |
Q |
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| T |
53491223 |
aacctgtgaaaaattgaagtgatttatttggtatctcattgaacataaacagtagaagcaaaatgacatatgtaagaatataagagcaacaacaagacaa |
53491322 |
T |
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| Q |
113 |
catagataacctgcttatttactaaatcctttggcccaatttcaatccttagagggacacctttcaattcccaatcagaatacttc |
198 |
Q |
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| T |
53491323 |
catagataacctgcttatttactaaatcctttggcccaatttcaatccttagagggacacctttcaattcccaatcagaatacttc |
53491408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 53498819 - 53499002
Alignment:
| Q |
13 |
aacctgtgaaaaattgaagtgatttatttggtatctcattgaacataaacagtagaagcaaaatgacatatgtaagaatataagagcaacaacaagacaa |
112 |
Q |
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| T |
53498819 |
aacctgtgcaaaattgaagtgatttatttggtgtctcattgaacatacagggtagaagcaaaatgacatgtg--agaatataagagcaacaacaggacaa |
53498916 |
T |
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| Q |
113 |
catagataacctgcttatttactaaatcctttggcccaatttcaatccttagagggacacctttcaattcccaatcagaatacttc |
198 |
Q |
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| T |
53498917 |
catagataacctgtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaatacttc |
53499002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 68 - 197
Target Start/End: Original strand, 16069958 - 16070087
Alignment:
| Q |
68 |
aagcaaaatgacatatgtaagaatataagagcaacaacaagacaacatagataacctgcttatttactaaatcctttggcccaatttcaatccttagagg |
167 |
Q |
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| T |
16069958 |
aagcataatgacatatgaaagaatacaagtgcaataatataacaacattaataacctgcttatttcctaaaccctttagcccaatttcaaccattaaagg |
16070057 |
T |
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| Q |
168 |
gacacctttcaattcccaatcagaatactt |
197 |
Q |
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| T |
16070058 |
gacacctttcatttcccattcagaatactt |
16070087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 53516478 - 53516516
Alignment:
| Q |
154 |
tcaatccttagagggacacctttcaattcccaatcagaa |
192 |
Q |
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| T |
53516478 |
tcaatccttagagggacacctttcatttcccattcagaa |
53516516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 45355440 - 45355367
Alignment:
| Q |
121 |
acctgcttatttactaaatcctttggcccaatttcaatccttagagggacacctttcaattcccaatcagaata |
194 |
Q |
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| T |
45355440 |
acctgcttatttgctaaatccttgggcccgatttcaatccttagaggaacacctttcatttcccactgagaata |
45355367 |
T |
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