View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2133_low_37 (Length: 213)
Name: NF2133_low_37
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2133_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 13799896 - 13799789
Alignment:
| Q |
97 |
actaacacccatcttcaccatgaaatcagctgtagcatttgcctcccaccacgtatgactcagttggaaattccagtcacgagccattagatccttgata |
196 |
Q |
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| T |
13799896 |
actagcacccatcttcaccatgaaatcagctgtagcatttgcctcccaccacgtatgactcagttggaaattccagtcgcgagccattagatccttgata |
13799797 |
T |
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| Q |
197 |
ttgatgat |
204 |
Q |
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||| |||| |
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| T |
13799796 |
ttgctgat |
13799789 |
T |
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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 49921496 - 49921668
Alignment:
| Q |
32 |
tcatcctgcagaagaggcaagactgcatcaggtggttctaaaaactcctgccagacttcattacaactaacacccatcttcaccatgaaatcagctgtag |
131 |
Q |
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||||||||||| |||||||||| ||||||||||||||| |||||||||||| |||| ||||| | | ||||||||| |||||||||||||||| | |
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| T |
49921496 |
tcatcctgcagcagaggcaagataccatcaggtggttctacaaactcctgccaagcttcgttacagttcgcgcccatcttcgccatgaaatcagctgtgg |
49921595 |
T |
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| Q |
132 |
catttgcctcccaccacgtatgactcagttggaaattccagtcacgagccattagatccttgatattgatgat |
204 |
Q |
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| T |
49921596 |
cattcgcctcccgccacgtatgactcagttgtaaatgccaatcgcgagccatcaggtcctttatattgctgat |
49921668 |
T |
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