View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2133_low_38 (Length: 212)
Name: NF2133_low_38
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2133_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 24391858 - 24391679
Alignment:
| Q |
14 |
agagaaaagaaagaatggtttagtataatttttaacaagaatgtgatgttctatctcttttcatggacatttgccaacttacaataatccaaaacgtatc |
113 |
Q |
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| T |
24391858 |
agagaaaagaaagaatgatttagtataatgtttaacaagaatgtgatgttctatctcttttcatggacatatgccaacttacaataatccaaaatgtatc |
24391759 |
T |
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| Q |
114 |
catgatagttgtaatatcaagataaacaaaaaattaatagttacttttcatgttaccatacatatactataatataagatcat |
196 |
Q |
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| T |
24391758 |
catgttagttgtaatatcaagataaacaaaaaattaatagttacttttcatgttaccatacata---tataatataagatcat |
24391679 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 49061397 - 49061365
Alignment:
| Q |
14 |
agagaaaagaaagaatggtttagtataattttt |
46 |
Q |
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| T |
49061397 |
agagaaaagaaagaatgatttagtataattttt |
49061365 |
T |
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