View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2133_low_6 (Length: 554)
Name: NF2133_low_6
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2133_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Complemental strand, 43542387 - 43541907
Alignment:
| Q |
18 |
acatgcaccatgacataataattggtttctaactatgtacactcaacttgtctaagaacctcgcttcaactcagataggtacctctacttttacctgcct |
117 |
Q |
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| T |
43542387 |
acatgcaccatgacataataattggtttctaactatgtacactcaacttgtctaagaacctcgcttcaactcagataggtacctctacttttacctgtct |
43542288 |
T |
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| Q |
118 |
tcataataattgtaaacattaccattatgtcatcaaatatgtagcatataatatagtttgttcaagattaattcagtcatatatggattaatgttgtgag |
217 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43542287 |
tcataacaattgtaaacattaccattatgtcatcaaatatgtagcatataatatagtttgttcaagattaattcactcatatatggattaatgttgtgag |
43542188 |
T |
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| Q |
218 |
ctccttttgttaatcgttgtannnnnnnaatatgacagttgatgatagcattttctggttggttatcttttgtagttttgaatgagacatgtcctt---a |
314 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43542187 |
ctccttttgttaatcgttgtatttttttaatatgacagttgatgataacattttctggttggttatcttttgtagttttgaatgagacatgtccttatga |
43542088 |
T |
|
| Q |
315 |
tgatgatgatgatagtaatatagctagtcttgcagccagaatccgaggctttcagaagcaggagtcaagagagatttctgagaatcttaccaaatctatt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
43542087 |
tgatgatgatgatagtaatatagctagtcttgcagccagaatccgaggctttcagaagcaggagtcaagagagatttctgagaatctgatcaaatctatt |
43541988 |
T |
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| Q |
415 |
cattgtcatggatagcagccagaaggtagccctcatgagtaatcaaaacgctaaagatttattggccattgtactgtcatc |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43541987 |
cattgtcatggatagcagccagaaggtagccctcatgagtaatcaaaacgctaaagatttattagccattgtactgtcatc |
43541907 |
T |
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