View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2133_low_7 (Length: 537)
Name: NF2133_low_7
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2133_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 37835397 - 37835922
Alignment:
| Q |
1 |
aagctatgaagtttaatttcggggaatacaatatttatactttcttatttcatatttgat-------acaaaagtatgtcattagttcattcctccttaa |
93 |
Q |
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| T |
37835397 |
aagctatgaagtttaattttggggaatacaatatttatactttcttatttcatatttgattgttacaataaaagtatgtcattagttcattcctccttaa |
37835496 |
T |
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| Q |
94 |
attacctcctcttccagataatggactaaaacaatgtgtgagagtttcctataacaatgtcaaatacaaagagttaaaaacaaattaaaaatttcatgaa |
193 |
Q |
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| T |
37835497 |
attacctcctcttccagataatggactaaaacaatgtgtgagagtttcctataacaatgtcaaatacaaagagttaaaaacaaattaaaaatttcatgaa |
37835596 |
T |
|
| Q |
194 |
gcaacaataattgataagttattctattaatctagaatattaaatactgcatagaaaatgttaaagatgaaaacttactcttcaatcaaccaataaattc |
293 |
Q |
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| T |
37835597 |
gcaacaataattgataagttattctattaatctagaatattaaatactgcatagaaaatgttaaagatgaaaacttactcttcaatcaaccaataaattc |
37835696 |
T |
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| Q |
294 |
gtctacaaaaattattattttgcgctccacgggcatagtagcactgtaatacttccacaccttcatcctgaaaacattacacctcattcgacgcaaaagt |
393 |
Q |
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| T |
37835697 |
gtctacaaaaattattattttgcgctccacgggcatagtagcactgtaatacttccacaccttcatcctgaaaacattacacctcattcgacgcaaaagt |
37835796 |
T |
|
| Q |
394 |
atatataacgtnnnnnnnnnnnngatctcccattacagtttaatttccaaaacagaatttgtcaataaaattaagtttgtaacaatacataccatgagct |
493 |
Q |
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| T |
37835797 |
atatataatgtaaaaataaaaaagatctcccattacagtttaatttccaaaacagaatttgtcaataaaattaagtttgtaacaatacataccatgagct |
37835896 |
T |
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| Q |
494 |
ttccatggctttcctggagagttttt |
519 |
Q |
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| T |
37835897 |
ttccatggctttcctggagagttttt |
37835922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 37844418 - 37844486
Alignment:
| Q |
104 |
cttccagataatggactaaaacaatgtgtgagagtttcctataacaatgtcaaatacaaagagttaaaa |
172 |
Q |
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| T |
37844418 |
cttcccgataatggactagaacgatgtgtgagagttccctgtaacaatgtcgaatacaaagagtgaaaa |
37844486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 367
Target Start/End: Original strand, 37845087 - 37845207
Alignment:
| Q |
247 |
gaaaatgttaaagatgaaaacttactcttcaatcaaccaataaattcgtctacaaaaattattattttgcgctccacgggcatagtagcactgtaatact |
346 |
Q |
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| T |
37845087 |
gaaaatggtacacatgaaaacttactcctcaagcatccagtaagttcgtctttgaaaattatcattttgttctccatgggcgtagtagcagtgcaatact |
37845186 |
T |
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| Q |
347 |
tccacaccttcatcctgaaaa |
367 |
Q |
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||||||| | || |||||||| |
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| T |
37845187 |
tccacacttccagcctgaaaa |
37845207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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