View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2133_low_9 (Length: 513)
Name: NF2133_low_9
Description: NF2133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2133_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 6824748 - 6824275
Alignment:
| Q |
1 |
tgtgtatggatgttcataaaataccaatttatacatgaatgtgttcaactctaatttctcatccctccaaacgttattaacattagttacgagtatattt |
100 |
Q |
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| T |
6824748 |
tgtgtatggatgttcataaaataccaatttatacatgaatgtgttcaactctaatttctcatccctcctaacgttattaacattagttacgagtatattt |
6824649 |
T |
|
| Q |
101 |
ggagaaaaaatgataaatgtatttagtaatttgaaatgcaatttatagttaggtagaatatgctctttcccaaggacactaacattaggggacaatgata |
200 |
Q |
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| T |
6824648 |
ggagaaaaaatgataaatgtatttagtaatttgaaatgcaatttatagttaggtagaatatgctctttcccaaggacactaacattaggg-acaaggata |
6824550 |
T |
|
| Q |
201 |
gaaaattcataatcaatcatttcaattagattttggacaccaacattaggttactatt----ctaactgtatcgaaattataaacacatatgtaagtgtt |
296 |
Q |
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| T |
6824549 |
gtaaattcataatcaatcatttcaattagattttggacaccaacattaggttactatgactcctaactgtatcgaaattacaaacacatatgtaagtgtt |
6824450 |
T |
|
| Q |
297 |
tgttttgtgagtaattttattgaccaatctaactaacaaaagacaaattgaatgatcaaactaaataacaaaagt-atgttcatgtatgtttttgtaatt |
395 |
Q |
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| T |
6824449 |
tgttttgtgagtaattttatggaccaatctaactaacaaaagacaaattgaatgatcaaactaaataacaaaagtcatgttcatgtatgtttttgtaatt |
6824350 |
T |
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| Q |
396 |
ttgatacatgcaaagattatagcgaaaacacatcacaca-ttaagtaacaaaatgacttttcagcgtgtctggtg |
469 |
Q |
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| T |
6824349 |
ttgatacatgcaaagattatagcgaaaacacatcacacatttaagtaacaaaatgactttttagcatgtgtggtg |
6824275 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 47973225 - 47973167
Alignment:
| Q |
5 |
tatggatgttcataaaataccaatttatacatgaatgtgttcaactctaatttctcatc |
63 |
Q |
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|||||| |||| |||||||||| ||| || |||| ||||||||||||| |||||||||| |
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| T |
47973225 |
tatggaagttcgtaaaataccattttgtatatgagtgtgttcaactctgatttctcatc |
47973167 |
T |
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