View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2134-Insertion-1 (Length: 1105)
Name: NF2134-Insertion-1
Description: NF2134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2134-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 605; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 8 - 654
Target Start/End: Original strand, 45438615 - 45439258
Alignment:
| Q |
8 |
gaaggttcttgttccaactatttgatgggaaattaccctattcagatgaattacacatccactgataatattccaaataatcctaactcttctcattggt |
107 |
Q |
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| T |
45438615 |
gaaggttcttgttccaactatttgatgggaaattaccctattcagatgaattacacatccactgataatattccaaataatcctaactcttctcattggt |
45438714 |
T |
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| Q |
108 |
tcaaccaaacaggattaaaaccttttgacatgaactctgaatttacttcaacttctaacatcatgtcaattcttccacaaactaatacctcatttcttcc |
207 |
Q |
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| T |
45438715 |
tcaaccaaacaggattaaaaccttttgatatgaactctgaatttacttcaacttctaacatcatgtcaattcttccacaaactaatacctcatttcttcc |
45438814 |
T |
|
| Q |
208 |
taatgctttttgctacaaaccatcagaagatgtttctatgtcttcatcttctttccctatgaagaatagtatcttatcttcttggggaattacagataat |
307 |
Q |
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| T |
45438815 |
taatgctttttgctacaaaccatcagaagatgtttctatgtcttcatcttctttccctatgaagaatagtatcttatcttcttggggaattacagat--- |
45438911 |
T |
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| Q |
308 |
tgtgacacctctattaaagagaatcaaacagaagaagaggaagaagaagccaagtggaatgagtatcttcacaatccaatgttaatactacaaaatcaag |
407 |
Q |
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| T |
45438912 |
tgtgacacctctattaaagagaatcaaacagaagaagaagaagaagaagccaagtggaatgagtatcttcacaatccaatgttaatgctacaaaatcaag |
45439011 |
T |
|
| Q |
408 |
catctgaatctttatgcaatgaaataaagcctgacacaaatttaggccctgatggtttaggggacatattgccacattccaagcaacaagaatcttctca |
507 |
Q |
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| T |
45439012 |
catctgaatctttatgcaatgaaataaagcctgacacaaatttaggccctgatggtttaggggacatattgccacattccaagcaacaagaatcttctca |
45439111 |
T |
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| Q |
508 |
atcttataatatagcagcttttggacaagtgtagcaggcttttggcataaagaatgattttaacgggcttcaaggaatttcagattgtgtgaccaaatat |
607 |
Q |
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| T |
45439112 |
atcttataatatagcagcttttggacaagtgtagcaggcttttgacataaagaatgattttaaggggcttcaaggaatttcagattgtgcgaccaaatat |
45439211 |
T |
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| Q |
608 |
tttgtttttgtatatagtttttcaccaaacatttatgtcagtctctt |
654 |
Q |
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| T |
45439212 |
tttgtttctgtatatagtttttcaccaaacatttatgtcagtctctt |
45439258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 649 - 957
Target Start/End: Original strand, 45439281 - 45439590
Alignment:
| Q |
649 |
tctctttttaatttctctggtgtgggtacaattgcaaaataaggattcttctttctactctctttgtttcattgatg---catttaggaaattacaatgg |
745 |
Q |
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| T |
45439281 |
tctctttttaatttctctggtgtgggtacaattgcaaaataaggattcttctttctactctctttgtttcattgatgatgcacttaggaaattacaatgg |
45439380 |
T |
|
| Q |
746 |
ttcattttccatatccatccataactagtttcccttttctttttcaattgggacaatagtcactttttctttgccatgtcatatgttctatgtatctatc |
845 |
Q |
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| T |
45439381 |
ttcattttccatatcc----ataactagtttcccttttctttttcaattgggacaatagtcactttttctttgccatgtcatatgttctatgtatctatc |
45439476 |
T |
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| Q |
846 |
cattatcgtaatgactaatctgtaccggaaaattgtgtatgtcacttttagtgagtttttccttctatccattttttccattcacaaatttt-aaatg-a |
943 |
Q |
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| T |
45439477 |
cattattgtaatgactaatctgtaccggaaaattgtgtatgtcacttttagtgagtttttccttctatccattttttccattcacaaattttaaaatgaa |
45439576 |
T |
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| Q |
944 |
aatcttattaaaaa |
957 |
Q |
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| T |
45439577 |
aatcttattaaaaa |
45439590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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