View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2134-Insertion-2 (Length: 737)
Name: NF2134-Insertion-2
Description: NF2134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2134-Insertion-2 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 316 - 737
Target Start/End: Original strand, 41885432 - 41885855
Alignment:
| Q |
316 |
tctctatctctaactttctacgtcaatcatcatccacttca-gcaatccctctttttcacatgaccaccac-gatgtcaatacttccaaagatttcgaga |
413 |
Q |
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| T |
41885432 |
tctctctctctaactttctacgtcaatcatcatccacttcatgcaatccctctttttcacatgaccaccaccgatgtcaatactttcaaagatttcgaga |
41885531 |
T |
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| Q |
414 |
aagtgatgagtattcttggccacggcaacacagttatttcagctcttaataccctagacttaaccactctacttcaacaacattaaaacctcttgtcaaa |
513 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41885532 |
aagtgatgagtatttttggccacggcaacacaattatttcagctcttaataccctagacttaaccactctacttcaacaacattaaaacctcttgtcaaa |
41885631 |
T |
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| Q |
514 |
ttaaattagttcaaaccccaaatgttccacctcataatcttattcactttgtaagatgtgcttggaagaaaaagaagtacctcgttagtacccactgtac |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41885632 |
ttaaattagttcaaaccccaaatgttccacctcataattttattcactttgtaagatgtgcttggaagaaaaagaagtacctcgttagtatccactgtac |
41885731 |
T |
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| Q |
614 |
tggaatcccttgtttcatcaatatgctctaatgttcactctcaatatcatgcttaactaagcaagaattgtatactttttcctgtgggatttgcttaaga |
713 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41885732 |
tggaatcccttgtttcatcaatatgctctaatgttcactctcaatatcatgcttaactaagcaagaattgtatactttttcctgtgggatttgcttaaga |
41885831 |
T |
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| Q |
714 |
ctacaggccattatcagaccggcc |
737 |
Q |
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| T |
41885832 |
ctacaggccattatcagaccggcc |
41885855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 45 - 326
Target Start/End: Original strand, 41885102 - 41885382
Alignment:
| Q |
45 |
ctccttctagtgaataaatgaaatcaaatttctttgcaca--atggaaacaaacacgtaccataagatttgcttcaagtctgttagctttttagtttcac |
142 |
Q |
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| T |
41885102 |
ctccttctagtgaataaatgaaatcaaatttctttgcacacaatggaaacaaacacgtaccataagatttgcttcaagtctgttagctttttagtttcac |
41885201 |
T |
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| Q |
143 |
ccgaagttacccgtaaacaaagcacgacagtataaactacatcacttcattctacaccagaggttgttgccatttgctgcaagacatggcatcaactaca |
242 |
Q |
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| T |
41885202 |
ccgaagttacccttaaacaaagcacgacagtataaactacatcacttcattctacaccagaggttgttgccatttgctgcaagacatggcatcaactaca |
41885301 |
T |
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| Q |
243 |
tcacctcttcttcttcctccttctctaccagaagaagaattccttaccataatcctaagccctaaggtcattttctctatctct |
326 |
Q |
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| T |
41885302 |
tcacctcttcttcctcctccttctctacc---agaagaattccttaccataatcctaagccctaaggtcattctctctctctct |
41885382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 668 - 737
Target Start/End: Complemental strand, 38605957 - 38605889
Alignment:
| Q |
668 |
aactaagcaagaattgtatactttttcctgtgggatttgcttaagactacaggccattatcagaccggcc |
737 |
Q |
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| T |
38605957 |
aactaaggaagaatgacatactttttc-tgtgggatttgcttaagaatattggccattatcaaaccggcc |
38605889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 556
Target Start/End: Complemental strand, 38606125 - 38606068
Alignment:
| Q |
499 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataatcttat |
556 |
Q |
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| T |
38606125 |
aaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttat |
38606068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 556
Target Start/End: Complemental strand, 40181645 - 40181588
Alignment:
| Q |
499 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataatcttat |
556 |
Q |
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| T |
40181645 |
aaacctcttgtcaaactaaattagctgaaaccctagaagttccacctcagaatcttat |
40181588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 499 - 649
Target Start/End: Original strand, 44459281 - 44459430
Alignment:
| Q |
499 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataatcttattcactttgtaagatgtgcttggaagaaaaagaagtacctcgt |
598 |
Q |
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| T |
44459281 |
aaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctcat |
44459380 |
T |
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| Q |
599 |
tagtacccactgtactggaatcccttgtttcatcaatatgctctaatgttc |
649 |
Q |
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| T |
44459381 |
cactaccc-ctgttctggaatcccttgtttcatcaatatgctctactgttc |
44459430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 499 - 649
Target Start/End: Original strand, 44466814 - 44466963
Alignment:
| Q |
499 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataatcttattcactttgtaagatgtgcttggaagaaaaagaagtacctcgt |
598 |
Q |
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| T |
44466814 |
aaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctcat |
44466913 |
T |
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| Q |
599 |
tagtacccactgtactggaatcccttgtttcatcaatatgctctaatgttc |
649 |
Q |
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| T |
44466914 |
cactaccc-ctgttctggaatcccttgtttcatcaatatgctctactgttc |
44466963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 499 - 639
Target Start/End: Original strand, 46358852 - 46358991
Alignment:
| Q |
499 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataatcttattcactttgtaagatgtgcttggaagaaaaagaagtacctcgt |
598 |
Q |
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| T |
46358852 |
aaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaaggacctcat |
46358951 |
T |
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| Q |
599 |
tagtacccactgtactggaatcccttgtttcatcaatatgc |
639 |
Q |
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| T |
46358952 |
cactaccc-ctgttctggaatcccttgtttcagaaatatgc |
46358991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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