View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21340_high_1 (Length: 484)
Name: NF21340_high_1
Description: NF21340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21340_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 5354427 - 5353959
Alignment:
| Q |
1 |
aatgcaacaaatgaaggatttcttgctaatatagctttcaggttgaccnnnnnnn-gtatggttcatagttattgattttgaagttgttgagtatggcct |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5354427 |
aatgcaacaaatgaaggatttcttgctaatatagctttcaggttgaccttttttttgtatggctcatagttattgattttgaagttgttgagtatggcct |
5354328 |
T |
|
| Q |
100 |
atagttattgttgagtatggcttactattaatgtaagttgtacactataactttaatttttcaccgataatacaaaggaactacagctgctttgtagtca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5354327 |
atagttattgttgagtatggcttactattaatgtaagttgtacactataactttaatttttcaccgataatacaaaggaactacagctgctttgtagtca |
5354228 |
T |
|
| Q |
200 |
gagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgtttaactgtttattgtttgcatttattatttctttactcttctgaacaggcttc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5354227 |
gagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgtttaactgtttattgtttgcatttattatttctttactcttctgaacaggcttc |
5354128 |
T |
|
| Q |
300 |
tgttctatcagaagtaactataattttctttcctagaagttgtttttaaatcaatatatttcatgaaaatttgtgattttgatacaggtgcactttcatg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5354127 |
tgttctatcagaagtaactataattttctttcctagaagttgtttttaaatcaatatatttcatgaaaatttgtgattttgatacaggtgcactttcatg |
5354028 |
T |
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| Q |
400 |
gatttgtggaggagaagtaaacttgtcttctttttgtgttcaaagatgcataatagatggagtgaacat |
468 |
Q |
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| T |
5354027 |
gatttgtggaggagaagtaaacttgtcttctttttgtgttcaaagatgcataatagatggagtgaacat |
5353959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 5508996 - 5508954
Alignment:
| Q |
205 |
gtaggcaaaattggccgaacttcgttaccaaacattgtgtgtt |
247 |
Q |
| |
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||||||||||||||| ||| ||||||||||| ||||||||||| |
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| T |
5508996 |
gtaggcaaaattggctgaatttcgttaccaagcattgtgtgtt |
5508954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 249
Target Start/End: Original strand, 6788048 - 6788145
Alignment:
| Q |
152 |
ttaatttttcaccgataatacaaaggaactacagctgctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgttta |
249 |
Q |
| |
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||||| |||||| |||||| ||||||||| ||||| || || |||| |||| |||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
6788048 |
ttaatctttcactcataataaaaaggaactgcagcttctctgcagtcggagatgtaggcaatattggccgaacttcgttaccaaacatcgtgtgttta |
6788145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 8467115 - 8467036
Alignment:
| Q |
165 |
gataatacaaaggaactacagctgctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgt |
244 |
Q |
| |
|
||||||||||||||||| ||||| || | |||| |||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
8467115 |
gataatacaaaggaactgcagcttctctacagtcggagacgtaggcaatattggccgaacttcgttaccaaacattgtgt |
8467036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 6939486 - 6939405
Alignment:
| Q |
166 |
ataatacaaaggaactacagctgctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgtt |
247 |
Q |
| |
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|||||| ||||||||| |||||||| || |||| |||| |||||||| |||||| ||||||||||||||||||| ||||||| |
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|
| T |
6939486 |
ataataaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggctgaacttcgttaccaaacatcgtgtgtt |
6939405 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 6942661 - 6942580
Alignment:
| Q |
166 |
ataatacaaaggaactacagctgctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgtt |
247 |
Q |
| |
|
|||||| ||||||||| |||||||| || |||| |||| |||||||| |||||| ||||||||||||||||||| ||||||| |
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|
| T |
6942661 |
ataataaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggctgaacttcgttaccaaacatcgtgtgtt |
6942580 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 28362647 - 28362730
Alignment:
| Q |
164 |
cgataatacaaaggaactacagctgctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgtt |
247 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||| |||| ||||||||||||| ||||| |||||||||||| ||||||| |
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| T |
28362647 |
cgataatacaaaggaactgcagctgctctgcagtctgagacataggcaaaattggttaaactttgttaccaaacatcgtgtgtt |
28362730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 1569744 - 1569823
Alignment:
| Q |
165 |
gataatacaaaggaactacagctgctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgt |
244 |
Q |
| |
|
||||||||||| ||||| ||| | ||||| |||| |||| ||||||||||||| | |||||||||| ||| ||||||||| |
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|
| T |
1569744 |
gataatacaaatgaactgcagttcctttgcagtcggagacgtaggcaaaattgtctgaacttcgtttccagacattgtgt |
1569823 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 34564829 - 34564911
Alignment:
| Q |
166 |
ataatacaaaggaactacagctgctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgttt |
248 |
Q |
| |
|
|||||| |||||| ||||| | ||| | |||| |||| ||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
34564829 |
ataatagaaaggacctacaccagctctacagtcggagacgtaggcaaatttggccgaacttcgttaccaaacatcgtgtgttt |
34564911 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 30526250 - 30526194
Alignment:
| Q |
200 |
gagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgtttaactgttt |
256 |
Q |
| |
|
|||| ||||||| |||||| | |||||||||||||||||| ||||||||| |||||| |
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|
| T |
30526250 |
gagacgtaggcacaattggtcaaacttcgttaccaaacatcgtgtgtttatctgttt |
30526194 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 33720167 - 33720252
Alignment:
| Q |
158 |
tttcaccgataatacaaaggaactacagctgctt----tgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacat |
239 |
Q |
| |
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|||||| ||||||| ||||||||| |||||||| || |||| |||| ||||||||||||||||||||||||||| ||||||| |
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| T |
33720167 |
tttcacagataatagaaaggaactgcagctgctcgctctgcagtcggagatgtaggcaaaattggccgaacttcgttatcaaacat |
33720252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 15105206 - 15105286
Alignment:
| Q |
167 |
taatacaaaggaactacagctgctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgtt |
247 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||| |||| ||| || | ||||| |||||||||||||| |||||||||| |
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|
| T |
15105206 |
taatagaaaggaactgcagctgctttatagtcggagatatagacatatctggccaaacttcgttaccaactattgtgtgtt |
15105286 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 1782763 - 1782815
Alignment:
| Q |
195 |
agtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgtt |
247 |
Q |
| |
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|||| |||| || ||||||||||||| |||||| |||||||||||||| |||| |
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|
| T |
1782763 |
agtcggagaggttggcaaaattggccaaacttcattaccaaacattgtatgtt |
1782815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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