View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21340_high_2 (Length: 386)
Name: NF21340_high_2
Description: NF21340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21340_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 9 - 370
Target Start/End: Original strand, 3195517 - 3195877
Alignment:
| Q |
9 |
gaagaatattaggttgaaaggaaaaaactcatttgtatatatctaacatgtttttcgacaaagactagtcacgactaattgttaaacaaaagtacaaatg |
108 |
Q |
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| T |
3195517 |
gaagaaaattaggttgaaaggaaaaaactcatttgtatatatctaacatgttttttgacgaagactggtcacgactaattgttaaacaaaagtagaaacg |
3195616 |
T |
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| Q |
109 |
tcgcatctttatcgttgtnnnnnnnnncttagcaaaaatcacattatagagactattttaatttaaactttatgtaaccaaaattaggtatcataatcat |
208 |
Q |
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| T |
3195617 |
tcgcatctttatcgttgtaaaaaaaa-cttagcaaaaatcacattatagagactattttaatttaaactttatgtaaccaaaattaggtatcattatcat |
3195715 |
T |
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| Q |
209 |
tataatacctaattttaggaaagttatatagaagcactttaaacctcgtcacttttgtgtaactccattttaactttgatttcatcctaatcagtcctta |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3195716 |
tataatacctaattttaggaaagttatatagaagcactttaaacctcgtcacttttgtgtaactccattttaactttgatttcatcctaatcagtcctta |
3195815 |
T |
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| Q |
309 |
aactccaattatatcatgataatggacaaaagttaattagatatagaaccataactgaaaat |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3195816 |
aactccaattatatcatgataatggacaaaagttaattagatatagaaccataactgaaaat |
3195877 |
T |
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