View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21341_high_2 (Length: 566)
Name: NF21341_high_2
Description: NF21341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21341_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 50 - 314
Target Start/End: Complemental strand, 24207592 - 24207320
Alignment:
| Q |
50 |
gaatggtattggtaaggtagcctagaatgttatcttttatgcttgtttatttcaagaagtaataaggttctaatac--------attataaaaatcaata |
141 |
Q |
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| T |
24207592 |
gaatggtattagtaaggtagcctagaatgctatcttttatgcttctttatttcaagaaataataaggttctaatactagcatacatgataaaaatcaata |
24207493 |
T |
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| Q |
142 |
tgtaattgtaactaggcgatgagagattgaatagcaagtgtagtgaatcaaaattattgctttattcacactacaagctaatatgcttatagttttgagt |
241 |
Q |
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| T |
24207492 |
ttaaattgtaactaggtgatgagagattgaatagcaagtgaagtgaatcaaaattaatgctttattcacaccacaagataatatgcttgtagttttaagt |
24207393 |
T |
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| Q |
242 |
acattttaatatgctattatatctcattgccttaggttagaaactagaagatataaatgaattcaattgagat |
314 |
Q |
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| T |
24207392 |
acattttaatatgctgttatatctctttgccgtaggttagaaactacaagacataaatgaattcaatggagat |
24207320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 393 - 538
Target Start/End: Complemental strand, 24206993 - 24206849
Alignment:
| Q |
393 |
gatagatgtggtgtaaaatcttagacttagagttgcatatgatgcgttcactgtgcttaaaattggatagtttaaggcttgctgtgcatagaatatattg |
492 |
Q |
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| T |
24206993 |
gatagaggtggtgtaaa-tcgtagacttagagttgcatatgatgcattcactttgcttaaaattggagaggttaaggcttgctgtgcatagaatatattg |
24206895 |
T |
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| Q |
493 |
gcaacagagtgtatagggaagtgccatcgtgaagcgccagcgtcca |
538 |
Q |
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| T |
24206894 |
gcaacagagtgtatagggacttgccatcgcgaagcgccaccgtcca |
24206849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 24207089 - 24207050
Alignment:
| Q |
355 |
tggttgagctttgaaattaatgttaaatattattattgga |
394 |
Q |
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| T |
24207089 |
tggttgagctttgaaactaatgttaaattttattattgga |
24207050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 51 - 197
Target Start/End: Original strand, 2464075 - 2464227
Alignment:
| Q |
51 |
aatggtattggtaaggtagcctagaatgttatcttttatgcttgtttatttcaagaagtaataaggttct--------aatacattataaaaatcaatat |
142 |
Q |
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| T |
2464075 |
aatggtattagtaaagtagcctagaatgctatcttttatgcttgttta-ttcaaggagtaataaggttctggtactagcatacatgataaaaatcaatac |
2464173 |
T |
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| Q |
143 |
gtaattgtaactaggcgatgagagattgaatagcaagtgtagtgaatcaaaatta |
197 |
Q |
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| T |
2464174 |
gaaattgtaactaggtgatgagagcttgaaaagcaagtgaagtg-atcaaaatta |
2464227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 498
Target Start/End: Original strand, 9251826 - 9251899
Alignment:
| Q |
425 |
ttgcatatgatgcgttcactgtgcttaaaattggatagtttaaggcttgctgtgcatagaatatattggcaaca |
498 |
Q |
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| T |
9251826 |
ttgcatatgaggtattcattgtgcttaaaatttgagatgttaaggcttgttgtgcatagactatattggcaaca |
9251899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 498
Target Start/End: Complemental strand, 9318423 - 9318350
Alignment:
| Q |
425 |
ttgcatatgatgcgttcactgtgcttaaaattggatagtttaaggcttgctgtgcatagaatatattggcaaca |
498 |
Q |
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| T |
9318423 |
ttgcatatgaggtattcattgtgcttaaaatttgagatgttaaggcttgttgtgcatagactatattggcaaca |
9318350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 15695270 - 15695327
Alignment:
| Q |
130 |
taaaaatcaatatgtaattgtaactaggcgatgagagattgaatagcaagtgtagtga |
187 |
Q |
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| T |
15695270 |
taaaagtcaatatgaaaatgtaactaggtgatgagagattgaatagtaagtgaagtga |
15695327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 15702250 - 15702307
Alignment:
| Q |
130 |
taaaaatcaatatgtaattgtaactaggcgatgagagattgaatagcaagtgtagtga |
187 |
Q |
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| T |
15702250 |
taaaagtcaatatgaaaatgtaactaggtgatgagagattgaatagtaagtgaagtga |
15702307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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