View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21341_high_4 (Length: 467)
Name: NF21341_high_4
Description: NF21341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21341_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 30 - 467
Target Start/End: Original strand, 40964990 - 40965427
Alignment:
| Q |
30 |
aagacatggagagtaggtaacggtttcaattgggtatatacatttcattccattgataataaaaagaagagcaatgctactgggttggaacctcatgatt |
129 |
Q |
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| T |
40964990 |
aagacatggagagtaggtaacggtttcaattgggtatatacatttcattccattgataataaaaagaagagcaatgctactgggttggaacctcatgatt |
40965089 |
T |
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| Q |
130 |
ttgacaaagattcctcaatagtagcaaagatgctagtttccagtaatttatgttccgaaataaaagacaatgtatttgacaactctatgatgacagaatt |
229 |
Q |
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| T |
40965090 |
ttgacaaagattcctcaatagtagcaaagatgctagtttccagtaatttatgttccgaaataaaagacaatgtatttgacaactctatgatgacagaatt |
40965189 |
T |
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| Q |
230 |
tgttttgtatgatctttcacactcaagacatagcatttcgtccgnnnnnnngtcagtttgtgaacaaggtgcttttaaaactcgaaaagcttcccgtgtt |
329 |
Q |
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| T |
40965190 |
tgttttgtatgatctttcacactcaagacatagcatttcgtccgaaaaaaagtcagtttgtgaacaaggtgcttttaaaactcgaaaagcttcccgtgtt |
40965289 |
T |
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| Q |
330 |
ggatccatggaagaaacttttgagatggttgaagagagccttgcaatcaaaaacaaacttcaagagtctggtgattcaaagttttttcctctgctaccca |
429 |
Q |
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| T |
40965290 |
ggatccatggaagaaacttttgagatggttgaagagagccttgcaatcaaaaacaaacttcaagagtctggtgattcaaagttttttcctttgttgccta |
40965389 |
T |
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| Q |
430 |
cagagtcttattcgaaccttgaagttgctgccattatc |
467 |
Q |
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| T |
40965390 |
ctgagtcttattcgaaccttgaagttgctgccattatc |
40965427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 242
Target Start/End: Complemental strand, 2655322 - 2655108
Alignment:
| Q |
28 |
caaagacatggagagtaggtaacggtttcaattgggtatatacatttcattccattgataataaaaagaagagcaatgctactgggttggaacctcatga |
127 |
Q |
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|||||||||||||||||||||| | ||| |||||||||||||| ||||| || || ||| || || |||||| |||| | || |||| | |||| | |
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| T |
2655322 |
caaagacatggagagtaggtaatgctttaaattgggtatatacctttcactcttttcatactagaacgaagagtaatg---caggcttgggatctcaaca |
2655226 |
T |
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| Q |
128 |
ttttgacaaagat---tcctcaatagtagcaaagatgctagtttccagtaatttatgttccgaaataaaagacaatgtatttgacaactctatgatgaca |
224 |
Q |
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|| |||||||||| || ||||| |||||| ||||||||||||| ||| ||||||||| ||| || |||| ||| ||| |||| |||| | ||| |
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| T |
2655225 |
ttgtgacaaagattcatcatcaatggtagcacagatgctagtttcttgtagtttatgttctgaattagaagatggagtaattggaaactatatggttaca |
2655126 |
T |
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| Q |
225 |
gaatttgttttgtatgat |
242 |
Q |
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|||||||| ||||||||| |
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| T |
2655125 |
gaatttgtgttgtatgat |
2655108 |
T |
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