View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21341_high_6 (Length: 384)

Name: NF21341_high_6
Description: NF21341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21341_high_6
NF21341_high_6
[»] chr3 (5 HSPs)
chr3 (29-375)||(50806530-50806876)
chr3 (29-375)||(50869001-50869347)
chr3 (29-375)||(44196004-44196331)
chr3 (29-200)||(48553855-48554026)
chr3 (167-197)||(26599146-26599176)
[»] chr4 (2 HSPs)
chr4 (327-375)||(33929620-33929668)
chr4 (167-199)||(31038937-31038969)
[»] chr7 (4 HSPs)
chr7 (123-199)||(39362045-39362118)
chr7 (167-206)||(39591530-39591569)
chr7 (167-199)||(30456520-30456552)
chr7 (167-199)||(35536075-35536107)
[»] chr6 (1 HSPs)
chr6 (146-197)||(2732311-2732360)
[»] chr2 (1 HSPs)
chr2 (165-197)||(33944571-33944603)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 29 - 375
Target Start/End: Original strand, 50806530 - 50806876
Alignment:
Q  29 acatgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaacttaagc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50806530 acatgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaacttaagc 50806629  T
Q  129 acttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttgctttgaaattgggtttggatctccagtg 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50806630 acttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttgctttgaaattgggtttggatctccagtg 50806729  T
Q  229 acctgctgttttatgcatcaaagaattgtgagtgtaaattacttagtataccatcaataaccaaagtgaattaatagattannnnnnnnnnnnnnnnnaa 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||    
T  50806730 acctgctgttttatgcatcaaagaattgtgagtgtaaattacttagtataccatcaataaccaaagtgaattaatagattatttttttgtttttttttaa 50806829  T
Q  329 ggttaatgggttgttagctttttgatttggttgtatagattctgtgg 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  50806830 ggttaatgggttgttagctttttgatttggttgtatagattctgtgg 50806876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 29 - 375
Target Start/End: Complemental strand, 50869347 - 50869001
Alignment:
Q  29 acatgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaacttaagc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50869347 acatgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaacttaagc 50869248  T
Q  129 acttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttgctttgaaattgggtttggatctccagtg 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50869247 acttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttgctttgaaattgggtttggatctccagtg 50869148  T
Q  229 acctgctgttttatgcatcaaagaattgtgagtgtaaattacttagtataccatcaataaccaaagtgaattaatagattannnnnnnnnnnnnnnnnaa 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||    
T  50869147 acctgctgttttatgcatcaaagaattgtgagtgtaaattacttagtataccatcaataaccaaagtgaattaatagattatttttttgtttttttttaa 50869048  T
Q  329 ggttaatgggttgttagctttttgatttggttgtatagattctgtgg 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  50869047 ggttaatgggttgttagctttttgatttggttgtatagattctgtgg 50869001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 29 - 375
Target Start/End: Complemental strand, 44196331 - 44196004
Alignment:
Q  29 acatgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaacttaagc 128  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  44196331 acatgcataatgggaacaaaaggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaactta--- 44196235  T
Q  129 acttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttgctttgaaattgggtttggatctccagtg 228  Q
                 || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44196234 -------------gcgcttatgtataagctgtttttatttaaaataaagtcaaatagttttcatataagttgctttgaaattgggtttggatctccagtg 44196148  T
Q  229 acctgctgttttatgcatcaaagaattgtgagtgtaaattacttagtataccatcaataaccaaagtgaattaatagattannnnnnnnnnnnnnnnnaa 328  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||    
T  44196147 acctgcagttttatgcatcaaagaattgtgagtgtaaattacttagtataccatcaataaccaaagtgaattaatagatta---ttttttgtttttttaa 44196051  T
Q  329 ggttaatgggttgttagctttttgatttggttgtatagattctgtgg 375  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  44196050 ggttaatgggttgttagctttttgatttggttgtgtagattctgtgg 44196004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 48553855 - 48554026
Alignment:
Q  29 acatgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtattggcattttaccataaaggttccatttggataaacaacttaagc 128  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  48553855 acatgcataatgggaacaaaaggctatgctgctcctgagtatatcatgtcaggtattggcattttaccatataggttccatttggattaacaacttaagc 48553954  T
Q  129 acttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttg 200  Q
    |||||||||||||||  ||||||||||||| ||||||||||||||||||||| || ||||||||| ||||||    
T  48553955 acttatagcataagcgtttatgtataagctatttttatataaaataaagtcagattgttttcataaaagttg 48554026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 26599146 - 26599176
Alignment:
Q  167 ataaaataaagtcaaatagttttcatataag 197  Q
    |||||||||||||||||||||||||||||||    
T  26599146 ataaaataaagtcaaatagttttcatataag 26599176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 33929620 - 33929668
Alignment:
Q  327 aaggttaatgggttgttagctttttgatttggttgtatagattctgtgg 375  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33929620 aaggttaatgggttgttagctttttgatttggttgtgtagattctgtgg 33929668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 31038969 - 31038937
Alignment:
Q  167 ataaaataaagtcaaatagttttcatataagtt 199  Q
    ||||||||||||||||| |||||||||||||||    
T  31038969 ataaaataaagtcaaattgttttcatataagtt 31038937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 39362045 - 39362118
Alignment:
Q  123 ttaagcacttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagtt 199  Q
    |||||||||||||||||||||||||||||||||||| |||| ||   ||  |||||||||| |||||||| ||||||    
T  39362045 ttaagcacttatagcataagcacttatgtataagctattttcat---aataaaagtcaaattgttttcatgtaagtt 39362118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 39591569 - 39591530
Alignment:
Q  167 ataaaataaagtcaaatagttttcatataagttgctttga 206  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  39591569 ataaaataaagtcaaattgttttcatataagttgttttga 39591530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 30456552 - 30456520
Alignment:
Q  167 ataaaataaagtcaaatagttttcatataagtt 199  Q
    ||||||||||||||||| |||||||||||||||    
T  30456552 ataaaataaagtcaaattgttttcatataagtt 30456520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 35536075 - 35536107
Alignment:
Q  167 ataaaataaagtcaaatagttttcatataagtt 199  Q
    ||||||||||||||||| |||||||||||||||    
T  35536075 ataaaataaagtcaaattgttttcatataagtt 35536107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 2732360 - 2732311
Alignment:
Q  146 ttatgtataagctgtttttatataaaataaagtcaaatagttttcatataag 197  Q
    ||||||||||||| ||||||||  ||||||||||||||  ||||||||||||    
T  2732360 ttatgtataagctatttttata--aaataaagtcaaattattttcatataag 2732311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 33944571 - 33944603
Alignment:
Q  165 atataaaataaagtcaaatagttttcatataag 197  Q
    ||||||||||||||||||| |||||||||||||    
T  33944571 atataaaataaagtcaaattgttttcatataag 33944603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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