View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21341_high_9 (Length: 343)

Name: NF21341_high_9
Description: NF21341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21341_high_9
NF21341_high_9
[»] chr8 (7 HSPs)
chr8 (61-332)||(40966170-40966442)
chr8 (6-61)||(3375425-3375480)
chr8 (6-61)||(30224415-30224470)
chr8 (6-62)||(25249191-25249247)
chr8 (6-60)||(5567611-5567665)
chr8 (6-47)||(36535856-36535897)
chr8 (5-61)||(6428925-6428981)
[»] chr1 (2 HSPs)
chr1 (6-61)||(17449495-17449550)
chr1 (6-54)||(16808576-16808624)
[»] chr4 (6 HSPs)
chr4 (6-62)||(18656293-18656349)
chr4 (6-61)||(7040546-7040601)
chr4 (6-61)||(23564666-23564721)
chr4 (6-59)||(23566363-23566415)
chr4 (6-54)||(52518945-52518993)
chr4 (6-54)||(52520787-52520835)
[»] chr3 (3 HSPs)
chr3 (6-62)||(17402772-17402828)
chr3 (6-61)||(1140186-1140241)
chr3 (6-61)||(6789804-6789860)
[»] chr6 (4 HSPs)
chr6 (6-61)||(5377063-5377118)
chr6 (6-61)||(5378918-5378973)
chr6 (5-61)||(1088644-1088700)
chr6 (6-54)||(19645298-19645346)
[»] chr2 (1 HSPs)
chr2 (6-61)||(29758305-29758360)
[»] chr7 (7 HSPs)
chr7 (6-61)||(20046486-20046541)
chr7 (6-61)||(44963348-44963403)
chr7 (6-68)||(28014257-28014319)
chr7 (5-54)||(4895768-4895817)
chr7 (6-54)||(28124585-28124633)
chr7 (6-54)||(28126412-28126460)
chr7 (6-61)||(25471762-25471817)
[»] chr5 (1 HSPs)
chr5 (215-327)||(2653939-2654051)
[»] scaffold0189 (1 HSPs)
scaffold0189 (9-56)||(19133-19180)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 61 - 332
Target Start/End: Original strand, 40966170 - 40966442
Alignment:
Q  61 aaaaacaatgatttatatattgagtgcaggatggaaaaggcattagtttcataagatatgcatctatacggtcgtttgaaaatcagtacatcttattaca 160  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40966170 aaaaactatgatttatatattgagtgcaggatggaaaaggcattagtttcataagatatgcatctatacggtcgtttgaaaatcagtacatcttattaca 40966269  T
Q  161 gctgtgagattggtattgnnnnnnngttt-gttactgatatttatctgaactttcggtgcacagggagcaaaagaaagtagtcctactttcagcatgaaa 259  Q
    ||||||||||||||||||        ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40966270 gctgtgagattggtattgttttttttttttgttactgatacttatctgaactttcggtgcacagggagcaaaagaaagtagtcctactttcagcatgaaa 40966369  T
Q  260 atggtcgaagcggggcattatgctgttgactttcatgcaaaactatccacattacaagcattctccatctgtg 332  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40966370 atggtcgaagcggggcattatgctgttgattttcatgcaaaactatccacattacaagcattctccatctgtg 40966442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 3375480 - 3375425
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaaca 61  Q
    |||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||    
T  3375480 ttgctatcttacttacatctatgacctttctccctatgattccatgattcttaaca 3375425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 30224415 - 30224470
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaaca 61  Q
    |||||||||||||||||| |||||| |||||| |||||||||||||||||||||||    
T  30224415 ttgctatcttgcttacatctatgacttttctccctatgattccatgattcttaaca 30224470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 25249191 - 25249247
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaacaa 62  Q
    |||||||||||||||||| |||||| |||||| |||||||| |||||||||||||||    
T  25249191 ttgctatcttgcttacatatatgacttttctccctatgatttcatgattcttaacaa 25249247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 5567611 - 5567665
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaac 60  Q
    |||||||||||||||||| |||||| |||||| |||||||||||||||| |||||    
T  5567611 ttgctatcttgcttacatctatgacttttctccctatgattccatgatttttaac 5567665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 36535897 - 36535856
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattc 47  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  36535897 ttgctatcttgcttacatctatgacctttctccctatgattc 36535856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 6428925 - 6428981
Alignment:
Q  5 tttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaaca 61  Q
    ||||||||||| ||||||| |||||| | ||||  ||||||||||||||||||||||    
T  6428925 tttgctatcttacttacatctatgacttctctccttatgattccatgattcttaaca 6428981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 17449495 - 17449550
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaaca 61  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  17449495 ttgctatcttgcttacatctatgacctttctccctatgattccatgattcttaaca 17449550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 16808624 - 16808576
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgatt 54  Q
    ||||| |||||||||||| ||||| ||||||| ||||||||||||||||    
T  16808624 ttgctctcttgcttacatctatgatctttctccctatgattccatgatt 16808576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 18656293 - 18656349
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaacaa 62  Q
    |||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  18656293 ttgctatcttgcttacatctatgacttttctccctatgattccatgattcttaacaa 18656349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 7040546 - 7040601
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaaca 61  Q
    |||||||||||||||||| |||||| |||||| |||||||||||||||||||||||    
T  7040546 ttgctatcttgcttacatctatgacttttctccctatgattccatgattcttaaca 7040601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 23564721 - 23564666
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaaca 61  Q
    ||||||| |||||||||| |||||| |||||| |||||||||||||||||||||||    
T  23564721 ttgctattttgcttacatctatgacttttctccctatgattccatgattcttaaca 23564666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 23566415 - 23566363
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaa 59  Q
    |||||||||||||||||| |||||| |||||| |||||||||||||||||||||    
T  23566415 ttgctatcttgcttacatctatgacttttctc-ctatgattccatgattcttaa 23566363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 52518945 - 52518993
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgatt 54  Q
    ||||| |||||||||||| ||||| ||||||| ||||||||||||||||    
T  52518945 ttgctctcttgcttacatctatgatctttctccctatgattccatgatt 52518993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 52520787 - 52520835
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgatt 54  Q
    ||||| |||| ||||||| ||||| ||||||| ||||||||||||||||    
T  52520787 ttgctctctttcttacatctatgatctttctccctatgattccatgatt 52520835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 17402828 - 17402772
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaacaa 62  Q
    |||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  17402828 ttgctatcttgcttacatctatgacttttctccctatgattccatgattcttaacaa 17402772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 1140186 - 1140241
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaaca 61  Q
    |||||||||||||||||| |||||| |||||| |||||||||||||||||||||||    
T  1140186 ttgctatcttgcttacatctatgacttttctccctatgattccatgattcttaaca 1140241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 6789804 - 6789860
Alignment:
Q  6 ttgctatctt-gcttacatttatgacctttctcactatgattccatgattcttaaca 61  Q
    |||||||||| |||||||| |||||| | |||| |||||||||||||||||||||||    
T  6789804 ttgctatctttgcttacatctatgacttctctccctatgattccatgattcttaaca 6789860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 5377063 - 5377118
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaaca 61  Q
    |||||||||||||||||| |||||| |||||| |||||||||||||||||||||||    
T  5377063 ttgctatcttgcttacatctatgacttttctccctatgattccatgattcttaaca 5377118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 5378918 - 5378973
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaaca 61  Q
    |||||||||||||||||| |||||| |||||| |||||||||||||||||||||||    
T  5378918 ttgctatcttgcttacatctatgacttttctccctatgattccatgattcttaaca 5378973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 1088700 - 1088644
Alignment:
Q  5 tttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaaca 61  Q
    ||||||||||||||||||| |||||| | |||  |||||||||||||||||||||||    
T  1088700 tttgctatcttgcttacatctatgacttctcttcctatgattccatgattcttaaca 1088644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 19645346 - 19645298
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgatt 54  Q
    ||||||||||| |||||| |||||| |||||| ||||||||||||||||    
T  19645346 ttgctatcttggttacatctatgacttttctccctatgattccatgatt 19645298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 29758305 - 29758360
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaaca 61  Q
    |||||||||||||||||| |||||| |||||| |||||||||||||||||||||||    
T  29758305 ttgctatcttgcttacatctatgacttttctccctatgattccatgattcttaaca 29758360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 20046541 - 20046486
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaaca 61  Q
    ||||||||| |||||||| |||||| |||||| |||||||||||||||||||||||    
T  20046541 ttgctatctcgcttacatctatgacttttctccctatgattccatgattcttaaca 20046486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 44963348 - 44963403
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaaca 61  Q
    |||||||||| ||||||| |||||| |||||| |||||||||||||||||||||||    
T  44963348 ttgctatcttacttacatctatgacttttctccctatgattccatgattcttaaca 44963403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 28014319 - 28014257
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaacaaaaacaa 68  Q
    |||||||||||||||||| ||||| ||||||| |||||||| |||||||| |||||| |||||    
T  28014319 ttgctatcttgcttacatctatgatctttctccctatgatttcatgattcataacaacaacaa 28014257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 4895768 - 4895817
Alignment:
Q  5 tttgctatcttgcttacatttatgacctttctcactatgattccatgatt 54  Q
    |||||| |||||||||||| ||||| ||||||| ||||||||||||||||    
T  4895768 tttgctctcttgcttacatctatgatctttctccctatgattccatgatt 4895817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 28124633 - 28124585
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgatt 54  Q
    ||||| |||||||||||| ||||| ||||||| ||||||||||||||||    
T  28124633 ttgctctcttgcttacatctatgatctttctccctatgattccatgatt 28124585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 28126460 - 28126412
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgatt 54  Q
    ||||| |||||||||||| ||||| ||||||| ||||||||||||||||    
T  28126460 ttgctctcttgcttacatctatgatctttctccctatgattccatgatt 28126412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 25471817 - 25471762
Alignment:
Q  6 ttgctatcttgcttacatttatgacctttctcactatgattccatgattcttaaca 61  Q
    |||||||||| ||||||| ||||| |||||||  |||||||||||||||| |||||    
T  25471817 ttgctatctttcttacatctatgatctttctccttatgattccatgattcataaca 25471762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 327
Target Start/End: Complemental strand, 2654051 - 2653939
Alignment:
Q  215 ggtgcacagggagcaaaagaaagtagtcctactttcagcatgaaaatggtcgaagcggggcattatgctgttgactttcatgcaaaactatccacattac 314  Q
    |||||||||||| | ||||||| || |||||| || ||||||| | | || |||| |||||| ||||| ||||| || ||||| ||| ||||  ||||||    
T  2654051 ggtgcacagggaaccaaagaaattaatcctacctttagcatgacattagttgaagaggggcaatatgcagttgatttccatgccaaattatcttcattac 2653952  T
Q  315 aagcattctccat 327  Q
    |||| ||||||||    
T  2653951 aagctttctccat 2653939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 19133 - 19180
Alignment:
Q  9 ctatcttgcttacatttatgacctttctcactatgattccatgattct 56  Q
    ||||||||||||||| |||||  |||||| ||||||||||||||||||    
T  19133 ctatcttgcttacatctatgatttttctccctatgattccatgattct 19180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University