View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21342_high_12 (Length: 336)
Name: NF21342_high_12
Description: NF21342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21342_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 42 - 285
Target Start/End: Complemental strand, 54631400 - 54631157
Alignment:
| Q |
42 |
acatcatcaacatcaataacagcttgattaaactcacattgagaaacatcaatgacggaagatgaaagcggtgggtcctcccgcggagtgtgaaaaacgt |
141 |
Q |
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| T |
54631400 |
acatcatcaacatcaataacagcttgattaaactcacattgagaaagatcaatgacggaagatggaagcggtgggtcctccggcggagtgtgaaaaacgt |
54631301 |
T |
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| Q |
142 |
cttggttatcgaggtgatgggtgtctggagcggacaatgggatgatgggagggatgatctcagcggcggtggcatcgtggtggtggttgttgttgttgca |
241 |
Q |
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| T |
54631300 |
cttggttatcgacgtgctgggtgtctggagcgtacaatgggatgatgggagggatgatctcggcggcggtggcatcgtggtggtggttgttgttgttgca |
54631201 |
T |
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| Q |
242 |
gttgcagggtgaagtgagagtgtctccgacgaagggaacgctgt |
285 |
Q |
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| T |
54631200 |
gttgcagggtgaagtgagagtgtctccgacgaagggaacgctgt |
54631157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 86 - 259
Target Start/End: Original strand, 45313941 - 45314105
Alignment:
| Q |
86 |
aacatcaatgacggaagatgaaagcggtgggtcctcccgcggagtgtgaaaaacgtcttggttatcgaggtgatgggtgtctggagcggacaatgggatg |
185 |
Q |
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| T |
45313941 |
aacatcaatgacggaagatggaagcggtgggtcatccggcggagtgtgaaaaacgtcttggttatcgacgtgctgggtgtctggagcggacaagaggatg |
45314040 |
T |
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| Q |
186 |
atgggagggatgatctcagcggcggtggcatcgtggtggtggttgttgttgttgcagttgcagggtgaagtgag |
259 |
Q |
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| T |
45314041 |
acgggagggatgaact-------ggtg--atggtggtggaggttgttgttgttgcagttgcacggtgaagtgag |
45314105 |
T |
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