View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21342_high_13 (Length: 335)

Name: NF21342_high_13
Description: NF21342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21342_high_13
NF21342_high_13
[»] chr2 (10 HSPs)
chr2 (8-317)||(14566992-14567301)
chr2 (8-270)||(14574991-14575253)
chr2 (25-270)||(14552000-14552245)
chr2 (25-269)||(14850756-14851000)
chr2 (25-258)||(15023438-15023671)
chr2 (201-278)||(14513180-14513257)
chr2 (8-60)||(14520122-14520174)
chr2 (26-93)||(14524853-14524920)
chr2 (207-269)||(14533751-14533813)
chr2 (25-65)||(14485234-14485274)
[»] chr3 (1 HSPs)
chr3 (30-310)||(38525090-38525370)
[»] chr4 (1 HSPs)
chr4 (8-62)||(49553374-49553428)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 317
Target Start/End: Complemental strand, 14567301 - 14566992
Alignment:
Q  8 cgaagaatatcagattgagaagcacctttggcgagtaaaaattgaaactttggtagaatcgttttgtgggtatcgcaggaaagaagccatggttctcttt 107  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14567301 cgaacaatgtcagattgagaagcacctttggcgagtaaaaattgaaactttggtagaatcgttttgtgggtatcgcaggaaagaagccatggttctcttt 14567202  T
Q  108 tgatgattctgtgtatgtctgagtcattgaaaccatgaattttgaagaagttaagaactgaatcgggtttttgtgaggttttgaaataaagcggtttgga 207  Q
    |||||||  ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  14567201 tgatgatgttgtgtatgtctgagtcattgaaaccataatttttgaagaagttaagaactgaatcaggttttagtgaggttttgaaataaagcggtttgga 14567102  T
Q  208 agctttgagtgcaaattcatgtgagaagccaaacttgtggatgaggtaggaaacagtgaatgattgtgaaggggcagtgttgaagaatctgatagaaatt 307  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14567101 agctttgagtgcaaattcatgtgagaacccaaacttgtggatgaggtaggaaacagtgaatgattgtgaaggggcagtgttgaagaatctgatagaaatt 14567002  T
Q  308 tggtagagtg 317  Q
    ||||||||||    
T  14567001 tggtagagtg 14566992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 8 - 270
Target Start/End: Complemental strand, 14575253 - 14574991
Alignment:
Q  8 cgaagaatatcagattgagaagcacctttggcgagtaaaaattgaaactttggtagaatcgttttgtgggtatcgcaggaaagaagccatggttctcttt 107  Q
    |||||||| |||||   |||||||||||||| ||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||    
T  14575253 cgaagaatgtcagaggtagaagcacctttggagagtaaaaattgaaactttgggagaattcttttgtgggtatcgcaggaaagaagccatggttctcttt 14575154  T
Q  108 tgatgattctgtgtatgtctgagtcattgaaaccatgaattttgaagaagttaagaactgaatcgggtttttgtgaggttttgaaataaagcggtttgga 207  Q
    |||||||  | ||||| ||||||||||||||||| ||| ||||||||||||| | ||||||||| ||||||||||| ||||||||||||||| |||||||    
T  14575153 tgatgatgttttgtatatctgagtcattgaaaccgtgatttttgaagaagttgataactgaatcaggtttttgtgatgttttgaaataaagctgtttgga 14575054  T
Q  208 agctttgagtgcaaattcatgtgagaagccaaacttgtggatgaggtaggaaacagtgaatga 270  Q
    ||||||||||||  ||||| ||| ||| || || ||||||||||||||||| |||| ||||||    
T  14575053 agctttgagtgcggattcaggtgtgaaaccgaatttgtggatgaggtaggatacagcgaatga 14574991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 25 - 270
Target Start/End: Complemental strand, 14552245 - 14552000
Alignment:
Q  25 agaagcacctttggcgagtaaaaattgaaactttggtagaatcgttttgtgggtatcgcaggaaagaagccatggttctcttttgatgattctgtgtatg 124  Q
    |||||||||| ||| ||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||| ||||||||||   || ||||     
T  14552245 agaagcacctatggagagtaaaaattgaaactttgggagaatccttttctgggtatcgcaggaaagaagccatggttcccttttgatgacattgcgtata 14552146  T
Q  125 tctgagtcattgaaaccatgaattttgaagaagttaagaactgaatcgggtttttgtgaggttttgaaataaagcggtttggaagctttgagtgcaaatt 224  Q
    | ||||||  ||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  14552145 tgtgagtcggtgaaaccgtgatttttgaagaagttgagaactgaatcaggtttttgtgaggttttgaaataaagctgtttggaagctttgagtgcgaatt 14552046  T
Q  225 catgtgagaagccaaacttgtggatgaggtaggaaacagtgaatga 270  Q
    |||||||||| ||||| ||||||||||||||||| || ||||||||    
T  14552045 catgtgagaatccaaatttgtggatgaggtaggatacggtgaatga 14552000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 25 - 269
Target Start/End: Original strand, 14850756 - 14851000
Alignment:
Q  25 agaagcacctttggcgagtaaaaattgaaactttggtagaatcgttttgtgggtatcgcaggaaagaagccatggttctcttttgatgattctgtgtatg 124  Q
    |||||||||||||| || |||||| ||||||||||| || ||||||  |||||||| |||||||||||||||||||||  |||||| ||||||| |||||    
T  14850756 agaagcacctttggagattaaaaactgaaactttgggaggatcgttaagtgggtattgcaggaaagaagccatggttcgattttgacgattctgcgtatg 14850855  T
Q  125 tctgagtcattgaaaccatgaattttgaagaagttaagaactgaatcgggtttttgtgaggttttgaaataaagcggtttggaagctttgagtgcaaatt 224  Q
    ||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  14850856 tctaagtcattgaaaccatgatttttgaagaagttgagaactgaatctggtttttgtgaggttttgaaataaagctctttggaagctttgagtgcgaatt 14850955  T
Q  225 catgtgagaagccaaacttgtggatgaggtaggaaacagtgaatg 269  Q
    |||| ||||| || || |||| |||||||||||| || |||||||    
T  14850956 catgagagaatccgaatttgtcgatgaggtaggatacggtgaatg 14851000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 25 - 258
Target Start/End: Complemental strand, 15023671 - 15023438
Alignment:
Q  25 agaagcacctttggcgagtaaaaattgaaactttggtagaatcgttttgtgggtatcgcaggaaagaagccatggttctcttttgatgattctgtgtatg 124  Q
    |||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||| | ||||||||||| ||| ||| |    
T  15023671 agaagcgcctttggagagtaaaaattgaaactttgggagaatcgttttgtgggtattgcaggaaagaatccatggtacccttttgatgatactgcgtaag 15023572  T
Q  125 tctgagtcattgaaaccatgaattttgaagaagttaagaactgaatcgggtttttgtgaggttttgaaataaagcggtttggaagctttgagtgcaaatt 224  Q
    ||||||||  ||||||  ||| ||||||||||||  ||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||     
T  15023571 tctgagtcggtgaaactgtgatttttgaagaagtagagaactgaatcaggtttttgtgaggttttgaaataaagctctttggaagctttgagtgcaaatc 15023472  T
Q  225 catgtgagaagccaaacttgtggatgaggtagga 258  Q
    |||||||||| || || ||||  |||||||||||    
T  15023471 catgtgagaaaccgaatttgtcaatgaggtagga 15023438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 14513257 - 14513180
Alignment:
Q  201 gtttggaagctttgagtgcaaattcatgtgagaagccaaacttgtggatgaggtaggaaacagtgaatgattgtgaag 278  Q
    ||||||||||||||||||| |||| | | ||||| ||||| |||| |||||| || || ||||||||||| |||||||    
T  14513257 gtttggaagctttgagtgcgaatttaggcgagaatccaaatttgtcgatgagataagacacagtgaatgagtgtgaag 14513180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 14520174 - 14520122
Alignment:
Q  8 cgaagaatatcagattgagaagcacctttggcgagtaaaaattgaaactttgg 60  Q
    |||| |||||||||   |||||||||||||| |||||||||||||||||||||    
T  14520174 cgaataatatcagaggaagaagcacctttggagagtaaaaattgaaactttgg 14520122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 14524920 - 14524853
Alignment:
Q  26 gaagcacctttggcgagtaaaaattgaaactttggtagaatcgttttgtgggtatcgcaggaaagaag 93  Q
    |||||||||||||  || ||||||||||||||||| ||||| |  |||||||||||  ||||||||||    
T  14524920 gaagcacctttggatagaaaaaattgaaactttggaagaattgaattgtgggtatctgaggaaagaag 14524853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 14533813 - 14533751
Alignment:
Q  207 aagctttgagtgcaaattcatgtgagaagccaaacttgtggatgaggtaggaaacagtgaatg 269  Q
    |||||||||| ||| ||||||||||||| ||||| |||| ||||||||| || |||| |||||    
T  14533813 aagctttgagagcagattcatgtgagaatccaaaattgttgatgaggtatgatacagagaatg 14533751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 14485274 - 14485234
Alignment:
Q  25 agaagcacctttggcgagtaaaaattgaaactttggtagaa 65  Q
    |||||||||||||| ||| ||||||||||||||||| ||||    
T  14485274 agaagcacctttggagagaaaaaattgaaactttggcagaa 14485234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 38525090 - 38525370
Alignment:
Q  30 cacctttggcgagtaaaaattgaaactttggtagaatcgttttgtgggtatcgcaggaaagaagccatggttctcttttgatgattctgtgtatgtctga 129  Q
    ||||||||| || |||||||||||||||||| |||||| |||| ||||||| |||  |||||||  | ||||||||||||||||| | ||||||||||||    
T  38525090 cacctttggagattaaaaattgaaactttgggagaatccttttatgggtattgcaacaaagaagttagggttctcttttgatgatgcggtgtatgtctga 38525189  T
Q  130 gtcattgaaaccatgaattttgaagaagttaagaactgaatcgggtttttgtgaggttttgaaataaagcggtttggaagctttgagtgcaaattcatgt 229  Q
    || | ||||||| ||| | ||||||||||| | |||||||||||||||||||||||||||||||  ||  ||||  |||||||||| |||||||||||||    
T  38525190 gtaagtgaaaccgtgattcttgaagaagttgataactgaatcgggtttttgtgaggttttgaaacgaaagggttctgaagctttgattgcaaattcatgt 38525289  T
Q  230 gagaagccaaacttgtggatgaggtaggaaacagtgaatgattgtgaaggggcagtgttgaagaatctgatagaaatttgg 310  Q
    ||||| |  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38525290 gagaaactgaatttgtggatgaggtaggaaacagtgaatgattgtgaaggggcagtgttgaagaatctgatagaaaattgg 38525370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 49553428 - 49553374
Alignment:
Q  8 cgaagaatatcagattgagaagcacctttggcgagtaaaaattgaaactttggta 62  Q
    |||| |||||||||   |||||||||||||| |||||||||||||||||||||||    
T  49553428 cgaacaatatcagaagtagaagcacctttggagagtaaaaattgaaactttggta 49553374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University