View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21342_high_15 (Length: 281)
Name: NF21342_high_15
Description: NF21342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21342_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 34396330 - 34396495
Alignment:
| Q |
1 |
agtagaacaacaacacaaacctgtttcaaacaaaacctgttctatgtctcaacaattcccaaacttcaaatcaaatcaaaattaaacaaaacttaccaca |
100 |
Q |
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| T |
34396330 |
agtagaacaacaacacaaacctgtttcaaacaaaacctgttctatgtctcaacaattcccaaacttcaaatcaaatcaaaattaaacaaaacttaccaca |
34396429 |
T |
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| Q |
101 |
atttctagggttttcatctccaaattccacaatcacaattcaacaaaaatgtatgtgtagttcctt |
166 |
Q |
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| T |
34396430 |
atttctagggttttcatctccaaattccacaatcacaattcaacaaaaatgtatgtgtagttcctt |
34396495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 34396538 - 34396600
Alignment:
| Q |
204 |
aaattatcattttagttagtgcatcttctttcatattgtttctcagttgaaattgttacatgt |
266 |
Q |
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| T |
34396538 |
aaattatcattttagttagtgcatcttctttcatattgtttctcagttgaaattgttacatgt |
34396600 |
T |
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