View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21342_high_9 (Length: 351)
Name: NF21342_high_9
Description: NF21342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21342_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 340
Target Start/End: Original strand, 39982365 - 39982685
Alignment:
| Q |
20 |
aaaagcttaggcctacatttgagggaaatcctattaagaggtggtatagagataccaagtacttcttccaggataactggcgaagatcctgggtatttgc |
119 |
Q |
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| T |
39982365 |
aaaagcttaggcctacatttgagggaaatcctattaagaggtggtatagagataccaagtacttcttccaggataactggcgaagatcctgggtatttgc |
39982464 |
T |
|
| Q |
120 |
tctgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggca |
219 |
Q |
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| T |
39982465 |
tctgtggattggtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggca |
39982564 |
T |
|
| Q |
220 |
aaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcg |
319 |
Q |
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| T |
39982565 |
aaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcg |
39982664 |
T |
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| Q |
320 |
cttttgttccttttgatgatg |
340 |
Q |
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| T |
39982665 |
cttttgttccttttgatgatg |
39982685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 122 - 338
Target Start/End: Original strand, 44898551 - 44898767
Alignment:
| Q |
122 |
tgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaa |
221 |
Q |
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| T |
44898551 |
tgtggattggtgttatgtgtggtctatttgcctacaaattcatgcagtatagaagaaaagctgcatatgaagtgatgggccattgtgtctgtatggctaa |
44898650 |
T |
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| Q |
222 |
aggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgct |
321 |
Q |
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| T |
44898651 |
aggtgcagctgagacactcaaattgaatatggccattatcttattacctgtttgccgaaacaccgtaacctggcttagggacaagaccaagctaggcatt |
44898750 |
T |
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| Q |
322 |
tttgttccttttgatga |
338 |
Q |
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| T |
44898751 |
gctgttccttttgatga |
44898767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 122 - 338
Target Start/End: Original strand, 44885223 - 44885439
Alignment:
| Q |
122 |
tgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaa |
221 |
Q |
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|||||||| | || |||||||| |||||||||| ||||||||||| ||| | |||| | |||| ||| | |||||||| || ||||| |||||||| || |
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| T |
44885223 |
tgtggattggagttatgttaggtctatttgcctacaaatttgtgcagtatcgaagaaaagctgcttatgaggtgatgggccattgtgtttgcatggctaa |
44885322 |
T |
|
| Q |
222 |
aggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgct |
321 |
Q |
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||| || ||||| ||||| |||||||||||||| ||||||| || ||||||||||||||||| | || |||||||||| ||||||||||||||| | |
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| T |
44885323 |
aggtgcagctgagacactcaaattgaacatggctcttatcttgttacctgtttgccgaaacactgttacatggctcaggagcaagaccaagctaggcatt |
44885422 |
T |
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| Q |
322 |
tttgttccttttgatga |
338 |
Q |
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||||||||||| |||| |
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| T |
44885423 |
gttgttccttttaatga |
44885439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 191 - 339
Target Start/End: Original strand, 44914534 - 44914682
Alignment:
| Q |
191 |
aagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcac |
290 |
Q |
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|||| ||||| || |||||||||||||| ||||| || ||||| ||||| |||||||||||||| |||||||| || |||||||| |||||||||||||| |
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| T |
44914534 |
aagtaatgggtcattgtgtgtgcatggctaaaggtgcagctgagacactcaaattgaacatggctattatcttgttacctgtttgtcgaaacaccatcac |
44914633 |
T |
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| Q |
291 |
ttggctcaggaataagaccaagctaggcgcttttgttccttttgatgat |
339 |
Q |
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||||| ||||| |||||||| |||||| | |||||||||||||||| |
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| T |
44914634 |
atggcttaggaacaagaccaaactaggcattgctgttccttttgatgat |
44914682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 339
Target Start/End: Complemental strand, 46562263 - 46562141
Alignment:
| Q |
217 |
gcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctag |
316 |
Q |
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||||| || |||||||| || || || || |||||||| | || ||| |||||||||| |||||||||||||||||||||| | |||||||| ||| |
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| T |
46562263 |
gcaaagggtgctgctgagactctcaagttcaacatggcattaattttaatgcctgtttgtagaaacaccatcacttggctcagaagcaagaccaaattag |
46562164 |
T |
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| Q |
317 |
gcgcttttgttccttttgatgat |
339 |
Q |
| |
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| | | ||||||| ||||||||| |
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| T |
46562163 |
gagttgttgttccctttgatgat |
46562141 |
T |
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