View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21342_low_10 (Length: 348)
Name: NF21342_low_10
Description: NF21342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21342_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 26265755 - 26266084
Alignment:
| Q |
1 |
aaagtacataggtgcactgcagaggttgagttctttggtaaagaacatccaacaatccctccaactacaaatgatgagagaatacaccaacttggaagac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26265755 |
aaagtacataggtgcactgcagaggttgagttctttggtaaagaacatccaacaatccctccaactacaaatgatgagagaatacaccaacttggaagac |
26265854 |
T |
|
| Q |
101 |
aagcatcaagtatgattgttggagaggagaacataaaattagcaccaacctacacagcaagtgaagattttgcattttacttggaaaaagttcccggctc |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26265855 |
aagcatcaagtatgattgttggagaagagaacataaaattagcaccaacctacacagcaagtgaagattttgcattttacttggaaaaagttcccggctc |
26265954 |
T |
|
| Q |
201 |
atttttcctcttaggtatacaaaatgagaaggttggatccatatattcagctcatagtcctcactattttattgatgaagatgttcttcccattggtgct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26265955 |
atttttcctcttaggtatacaaaatgagaaggttggatccatatattcagctcatagtcctcactattttattgatgaagatgttcttccaattggtgct |
26266054 |
T |
|
| Q |
301 |
gcgatacatgcagcatttgctctttcatat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
26266055 |
gcgatacatgcagcatttgctctttcatat |
26266084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 31837298 - 31836988
Alignment:
| Q |
19 |
gcagaggttgagttctttggtaaagaacatccaacaatccctccaactacaaatgatgagagaatacaccaacttggaagacaagcatcaagtatgattg |
118 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||||| ||||| |||||||||||||||||||| ||||||| | || ||| ||| |||||||||| |
|
|
| T |
31837298 |
gcagaggttga-ttctttggcgaggaacatccaacaattcctcctactacaaatgatgagagaatctaccaactagcgaggaaagtatctagtatgattg |
31837200 |
T |
|
| Q |
119 |
ttggagaggagaacataaaattagcaccaacctacacagcaagtgaagattttgcattttacttggaaaaagttcccggctcatttttcctcttaggtat |
218 |
Q |
| |
|
||||||| ||||||||||||||| |||| | | ||||| |||||||||||||||||||||||||||||||| || |||||||||||| | |||||||| |
|
|
| T |
31837199 |
ttggagaagagaacataaaattatcacccatcgtcacagggagtgaagattttgcattttacttggaaaaagtgcctggctcatttttctttttaggtat |
31837100 |
T |
|
| Q |
219 |
acaaaatgagaaggttggatccatatattcagctcatagtcctcactattttattgatgaagatgttcttcccattggtgctgcgatacatgcagcattt |
318 |
Q |
| |
|
| ||||||| ||| |||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31837099 |
aaaaaatgaaaagagtggatccatatattcagctcatagtcctcaatttttcattgatgaagatgttcttcccattggtgctgcaatacatgcagcattt |
31837000 |
T |
|
| Q |
319 |
gctctttcatat |
330 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31836999 |
gctctttcatat |
31836988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University