View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21342_low_11 (Length: 342)
Name: NF21342_low_11
Description: NF21342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21342_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 17 - 337
Target Start/End: Original strand, 31166132 - 31166451
Alignment:
| Q |
17 |
aaaaataaatatacatttgacaatttctcttcttatcttcaaacatataactctctccaaccttctcatatctttatagaatccaaattccaatttcaaa |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31166132 |
aaaaataaatatacatt-gacaatttctcttcttatcttcaaacatataactctctccaaccttctcatatctttatagaatccaaattccaatttcaaa |
31166230 |
T |
|
| Q |
117 |
ccattcacttgtcacacacaacaaagtaatgtctgcagaacaaattctaacgttgttagattccttttggtttgaaacaacaattctaaccaacaaaaat |
216 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31166231 |
ccattcactcgtcacacacaacaaagtaatgtctgcagaacaaattctaacgttgttagattccttttggtttgaaacaacaattctaaccaacaaaaat |
31166330 |
T |
|
| Q |
217 |
ccttcaaaagttgaagaaattcttcctcaagacacaaatctcttacttgttccaactccaaaccttgatgttaggttctatagtgaacaaaacttgagca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31166331 |
ccttcaaaagttgaagaaattcttcctcaagacacaaatctcttacttgttccaactccaaaccttgatgttaggttctatagtgagcaaaacttgagca |
31166430 |
T |
|
| Q |
317 |
tcataggatctgttttctctg |
337 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
31166431 |
tcataggatctgttttctctg |
31166451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University