View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21342_low_18 (Length: 279)
Name: NF21342_low_18
Description: NF21342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21342_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 39562035 - 39561779
Alignment:
| Q |
1 |
caacacaatctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagatattggatcaattttatactatacactatg |
100 |
Q |
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| T |
39562035 |
caacacaatctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaggcacaactgagatattggatcaattttatactatacactatg |
39561936 |
T |
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| Q |
101 |
ttagtgctcaaggataatggataagagcagcttcctggaaagcatttccaatttaccttttccacactatataatgcatcacatacaacaactcaaactc |
200 |
Q |
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| T |
39561935 |
ttagtgctcaaggataa-------gagcagcttcctggaaagcatttccaatttaccttttccacactatataatgcatcacatacaacaactcaaactc |
39561843 |
T |
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| Q |
201 |
aaaccaacacattaaaaatattctttaatctcaatttcatctctctattttgagctacaaacat |
264 |
Q |
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| T |
39561842 |
aaaccaacacattaaaaatattctttaatctcaatttcatctctctattttgagctacaaacat |
39561779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 39566712 - 39566511
Alignment:
| Q |
3 |
acacaatctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagatattggatcaattttatactatacactatgtt |
102 |
Q |
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| T |
39566712 |
acacaatctcatgtgcatagtttaagattaagatggtattaatatattcacaaagagcacaacttagatattggatcaattttatataatacactatgtt |
39566613 |
T |
|
| Q |
103 |
agtgctcaaggataatggataagagcagcttcctggaaagcatttccaatttaccttttccacactatataatgcatcacataca--acaactcaaactc |
200 |
Q |
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| T |
39566612 |
agtgctcaa-------gaataagagcagcttcctggaaagcatttccagtttactttttgcacactatataatacatcatatacaacacaactcaaactc |
39566520 |
T |
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| Q |
201 |
aaaccaaca |
209 |
Q |
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|||| |||| |
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| T |
39566519 |
aaacaaaca |
39566511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 39560725 - 39560558
Alignment:
| Q |
1 |
caacacaatctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagatattggatcaattttatactatacactatg |
100 |
Q |
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||||| ||||| | ||||||| || |||| |||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||| |||||| |
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| T |
39560725 |
caacataatctgatgtgcatgattcaagaataagttggtattaatatattcacaaaaggcacaactgagatactggatcaattttatacaatatactatg |
39560626 |
T |
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| Q |
101 |
ttagtgctcaaggataatggataagagcagcttcctggaaagcatttccaatttaccttttccacactatataat |
175 |
Q |
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| T |
39560625 |
ttagtgttcaa-------agataagatcaacttcatggaaagcatttcctatttactttttccacactacataat |
39560558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 39572218 - 39572030
Alignment:
| Q |
1 |
caacacaatctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagatattggatcaattttatactatacactatg |
100 |
Q |
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||||||||||||| ||||||| | |||||||||| ||||| |||||||||| ||||| | |||||||||||| |||| ||||||||| |
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| T |
39572218 |
caacacaatctcatgtgcatgatataagattaagttggtagtaatatattcgcaaaatgaacaactgagatactggacaaattttata------------ |
39572131 |
T |
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| Q |
101 |
ttagtgctcaaggataatggataagagcagcttcctggaaagcatttccaatttaccttttccacactatataatgcatcacatacaacaactcaaactc |
200 |
Q |
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|||||| |||||||||| ||||||||||||| |||||||||||||||||| ||||| |||||||||||| |||||| |||||||| |||||||| |
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| T |
39572130 |
ttagtgttcaaggataa-------gagcagcttcctgtaaagcatttccaatttactttttcaacactatataatacatcacctacaacaattcaaactc |
39572038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 39581181 - 39581249
Alignment:
| Q |
136 |
tggaaagcatttccaatttaccttttccacactatataatgcatcacatacaacaactcaaactcaaac |
204 |
Q |
| |
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| T |
39581181 |
tggaaagcatttccacattactttttccacactatataatgcatcgcatacaacaacttaaactcaaac |
39581249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 39581076 - 39581146
Alignment:
| Q |
15 |
gtgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagatattggatcaatttt |
85 |
Q |
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||||||| || || |||||| |||||||||||||| |||||||||||||||||||||| | |||||||||| |
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| T |
39581076 |
gtgcatgattcaatattaagttggtattaatatatgcacaaaaagcacaactgagatactagatcaatttt |
39581146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 39584685 - 39584755
Alignment:
| Q |
2 |
aacacaatctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagata |
72 |
Q |
| |
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|||||||||| | | ||||| |||||||||||| |||| | |||||||||||||| |||||||||||||| |
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| T |
39584685 |
aacacaatctaatgcgcatgatttaagattaagttggtgtccatatattcacaaaaggcacaactgagata |
39584755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 39584828 - 39584896
Alignment:
| Q |
137 |
ggaaagcatttccaatttaccttt-tccacactatataatgcatcacatacaacaactcaaactcaaac |
204 |
Q |
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| T |
39584828 |
ggaaagcatttccaatttacttttctcaactctatataatacatcactagcaacaactcaaactcaaac |
39584896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 39574545 - 39574603
Alignment:
| Q |
5 |
acaatctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaagcacaa |
64 |
Q |
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| T |
39574545 |
acaatctgatgtgcatg-tttaagattaatttggtattaaaatattcacaaaaagcacaa |
39574603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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