View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21342_low_19 (Length: 267)
Name: NF21342_low_19
Description: NF21342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21342_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 46009830 - 46010036
Alignment:
| Q |
18 |
cttagtttggtttggtgtcaaagacattggtctttgtnnnnnnntcgttagttttccctgcagtgatttatttatttttcacttttataagactaaaact |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46009830 |
cttagtttggtttggtgtcaaagacattggtctttgtaaaaaaatcgttagttttccctgcagtgatttatttatttttcacttttataagactaaaact |
46009929 |
T |
|
| Q |
118 |
tttactgtgcgttagattaattaagtcaaacaaacattaaataattcatatgcttaaaaatgaatattaattttgttgcgagttaaataaatattttaaa |
217 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46009930 |
tttattgtgcgttaga---------------------taaataattcatatgcttaaaaatgaatattaattttgttgcgagttaaataaatattttaaa |
46010008 |
T |
|
| Q |
218 |
acaaatgtcgttttccatttttaatgtg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
46010009 |
acaaatgtcgttttccatttttaatgtg |
46010036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University