View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21342_low_2 (Length: 698)
Name: NF21342_low_2
Description: NF21342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21342_low_2 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0504 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 12 - 698
Target Start/End: Complemental strand, 54632100 - 54631377
Alignment:
| Q |
12 |
atcatcataggttaatatcaaaatacaattaagtagtagaaggacaacatatactattgagaattttccatgaaagcactgtcaatgtcctcaaaaagtc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54632100 |
atcatcataggttaatatcaaaatacaattaagtagtagaaggacaacatatactattgagaattttccatgaaagcactgtcaatgtcctcaaaaagtc |
54632001 |
T |
|
| Q |
112 |
agtta-------------ttcacctagaacttgaagagttcagattccatatcgtcgggccaccagctcggacgaggaaatttaataccagcacgcttta |
198 |
Q |
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||| | ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54632000 |
agtcaagaaaagaacttcttcacctagaagttgaagagttcagatttcatatcgtcgggccaccagctcggacgaggaaatttaataccagcacgcttta |
54631901 |
T |
|
| Q |
199 |
aagtttccaacaaagtaagaccatcatcttctttaacagaagtcttcgcaagaaatttcaacacatcaaaaacagttaacgtctccttctccttatcctt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54631900 |
aagtttccaacaaagtaagaccatcatcttctttaacagaagtcttcgcaagaaatttcaacacatcaaaaacagttaacgtctccttctccttctcctt |
54631801 |
T |
|
| Q |
299 |
atccttatcct---------cctccccagaccccctttcatttgcag---------------aagagccaattgacttgtttccctcaacatcaaccatg |
374 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54631800 |
ctccttatccttatccttatcctccccagaccccctttcatttgcagtcgctttctcgaaagaagagccaattgacttgtttccctcaacatcaaccatg |
54631701 |
T |
|
| Q |
375 |
ttaacatcctcagcatcattttgaacaacttgttgttgggtttcaacattttcctccaaagaatcaaacccaaattcgtcgtgaaaactagaaatttcgt |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
54631700 |
ttaacatcctcagcatcattttgaacaacttgttgttgggtttcaacattttcctccaaagaatcaaacccaaattcgtcgtgaaaactagaaatttctt |
54631601 |
T |
|
| Q |
475 |
tttcaaaaattctgagtttatcagaattctgctcaacattcataggatcaaaccctaatttcataggagccttatcaaaatcagaaattgccctatccaa |
574 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54631600 |
tttcaaaaattctgagtttatcagaatcctgctcaacattcataggatcaaaccctaatttcataggagccttatcaaaatcagaaattaacctatccaa |
54631501 |
T |
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| Q |
575 |
agcgctaaattcatcaggatgtatctcgggaaactcactcagtagatcttcttcaagagagcgtgacttttcaacaaacccaaattcagaatcttgagaa |
674 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54631500 |
agcgctaaattcatcaggatgtatctcgggaaactcactcagtagatcttcttcaagagagcgtgacttttcaacaaacccaaattcagaatcttgagaa |
54631401 |
T |
|
| Q |
675 |
acatcatcaacatcaataacagct |
698 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
54631400 |
acatcatcaacatcaataacagct |
54631377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 346 - 450
Target Start/End: Original strand, 45313733 - 45313834
Alignment:
| Q |
346 |
ttgacttgtttccctcaacatcaaccatgttaacatcctcagcatcattttgaacaacttgttgttgggtttcaacattttcctccaaagaatcaaaccc |
445 |
Q |
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||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| | |||||||||||||||||||| |||||||||| ||||||| |
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| T |
45313733 |
ttgacttatttccctcaacatcaatcatgttaatatcctcagcatcattttgaacagc---ttgttgggtttcaacatttttctccaaagaaacaaaccc |
45313829 |
T |
|
| Q |
446 |
aaatt |
450 |
Q |
| |
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||||| |
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| T |
45313830 |
aaatt |
45313834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 39487130 - 39487232
Alignment:
| Q |
129 |
ttgaagagttcagattccatatcgtcgggccaccagctcggacgaggaaatttaataccagcacgctttaaagtttccaacaaagtaagaccatcatctt |
228 |
Q |
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||||||| ||| |||| ||||||||| ||||||||||| ||||||||||| |||||||||||||||| |||||| | || ||||||| || |||||| |
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| T |
39487130 |
ttgaagatttcggatttcatatcgtccggccaccagcttggacgaggaaaagtaataccagcacgcttcccagtttcgaccacagtaagaacaccatctt |
39487229 |
T |
|
| Q |
229 |
ctt |
231 |
Q |
| |
|
||| |
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| T |
39487230 |
ctt |
39487232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 613
Target Start/End: Original strand, 45313842 - 45313927
Alignment:
| Q |
533 |
tttcataggagccttatcaaaatcagaaattgccctatcc-----aaagcgctaaattcatcaggatgtatctcgggaaactcact |
613 |
Q |
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|||||||||||||||||||| || |||||||||||||||| ||| |||||| ||||| |||| |||||| ||||||||||| |
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| T |
45313842 |
tttcataggagccttatcaacattagaaattgccctatcctatccaaaatgctaaaatcatccggatttatctcaggaaactcact |
45313927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 8059 - 7958
Alignment:
| Q |
129 |
ttgaagagttcagattccatatcgtcgggccaccagctcggacgaggaaatttaataccagcacgctttaaagtttccaacaaagtaagaccatcatctt |
228 |
Q |
| |
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|||||||||||||||| ||||||||| | |||||| || |||||||||||||||||||| |||||||| | || |||||||||||||||||||||||||| |
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| T |
8059 |
ttgaagagttcagatttcatatcgtccgaccaccaacttggacgaggaaatttaataccggcacgcttaagagattccaacaaagtaagaccatcatctt |
7960 |
T |
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| Q |
229 |
ct |
230 |
Q |
| |
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|| |
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|
| T |
7959 |
ct |
7958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 129 - 272
Target Start/End: Complemental strand, 18189535 - 18189389
Alignment:
| Q |
129 |
ttgaagagttcagattccatatcgtcgggccaccagctcggacgaggaaatttaataccagcacgctttaaagtttccaacaaagtaagaccatcatctt |
228 |
Q |
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|||||||||| ||||| |||||| || |||||||| || |||||||| || |||| ||||| |||||||| |||||||| |||||||||||||||||||| |
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| T |
18189535 |
ttgaagagttgagatttcatatcctccggccaccaacttggacgaggtaaattaacaccagaacgctttagagtttccagcaaagtaagaccatcatctt |
18189436 |
T |
|
| Q |
229 |
c---tttaacagaagtcttcgcaagaaatttcaacacatcaaaaaca |
272 |
Q |
| |
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| |||| |||| |||| || ||||||||||| |||||||||||| |
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| T |
18189435 |
cttttttatcagatgtctctgcgagaaatttcaatacatcaaaaaca |
18189389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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