View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21342_low_20 (Length: 264)
Name: NF21342_low_20
Description: NF21342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21342_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 2 - 248
Target Start/End: Complemental strand, 53104223 - 53103977
Alignment:
| Q |
2 |
aggaaataggcttggacatgccagtttctcttgctcgagcaagacaaaagccacccctgaaggtgaatattcatccatgcatgccactccacagctgcaa |
101 |
Q |
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| T |
53104223 |
aggaaataggctttaccatgccagtttctcttgctcgagcaagacaaaagccactcctgaaggtgaatattcatccatgcatgccactccactgctgcaa |
53104124 |
T |
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| Q |
102 |
ttgacctgtggtttcaatattaggtgttttggattatttcttatgtcatgttcatcgcatattcttcataaattgttttcactcttcagctagtggatga |
201 |
Q |
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| T |
53104123 |
ttgacctgtggtttcaatattaggtgttttgaattatttcttatgtcatgttcatcacatattcttcataaattgttttcactcttcagctagtggatga |
53104024 |
T |
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| Q |
202 |
aaaacagatatttgcagacaagaatgataatatcttagatgatctat |
248 |
Q |
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| T |
53104023 |
aaaacagatatttgcagacaagaatgataatatcttagatgatctat |
53103977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 69 - 248
Target Start/End: Complemental strand, 43916703 - 43916524
Alignment:
| Q |
69 |
tattcatccatgcatgccactccacagctgcaattgacctgtggtttcaatattaggtgttttggattatttcttatgtcatgttcatcgcatattcttc |
168 |
Q |
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| T |
43916703 |
tattcatctatgcatgccactccacagctgcaattgacctgtggtttcaatattaggtgttttggattatttcttatgttgtgttcatcacatattcttt |
43916604 |
T |
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| Q |
169 |
ataaattgttttcactcttcagctagtggatgaaaaacagatatttgcagacaagaatgataatatcttagatgatctat |
248 |
Q |
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| T |
43916603 |
ataaattgttttcattcttcagctagtggatgaaaatcagatatttgcagacaagaatgataatatcttagatgatctat |
43916524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 43916938 - 43916875
Alignment:
| Q |
2 |
aggaaataggcttggacatgccagtttctcttgctcgagcaagacaaaagccacccctgaaggt |
65 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43916938 |
aggaaataggctttagcatgccagtttctcttgctcgagcaagacaaaagccactcctgaaggt |
43916875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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