View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21342_low_21 (Length: 250)
Name: NF21342_low_21
Description: NF21342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21342_low_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 15161180 - 15160945
Alignment:
| Q |
13 |
taggaggatggaattgtatggtcttattcttatatacaacaaaatatttgcaatttactttttgacaatgtagtttgttcagaggcataaacaaggtgct |
112 |
Q |
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| T |
15161180 |
taggaggatggaattgtatggtcttattct-atatacaacaaa-tatttgcaatttactttttgacaatgtagtttgttcagaggcataaacatggtgct |
15161083 |
T |
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| Q |
113 |
tccaataagttgtttaatgtcaagcttattttgaattgtttctgcttctttagcttgattgatgataatataaattgatttaggtcagagttgatatagg |
212 |
Q |
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| T |
15161082 |
tcccataagttgtttaatgtcaagcttattttgtattgtttctgcttctttagcttgattgatgataatataaattgatttaggtcagagttgatatagg |
15160983 |
T |
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| Q |
213 |
gaaaccgattaaggcatcagatgtgcgtgagtctctcc |
250 |
Q |
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| T |
15160982 |
gaaaccgattaaggcatcagatgtgcgtgagtctctcc |
15160945 |
T |
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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 40249985 - 40249924
Alignment:
| Q |
158 |
ttctttagcttgattgatgataatataaattgatttaggtcagagttgatatagggaaaccg |
219 |
Q |
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| T |
40249985 |
ttctttagcttgattgatgataatactaattgatttaggtcagagttgatatgggggaaccg |
40249924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 40250156 - 40250097
Alignment:
| Q |
18 |
ggatggaattgtatggtcttattcttatatacaacaaaatatttgcaatttactttttgac |
78 |
Q |
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| T |
40250156 |
ggatggaaatgtatgttcttattcttatatgcagcaaa-tatttgcaatttactttttgac |
40250097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 26880403 - 26880363
Alignment:
| Q |
152 |
ttctgcttctttagcttgattgatgataatataaattgatt |
192 |
Q |
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| T |
26880403 |
ttctacttctttagcttgatggatgataatacaaattgatt |
26880363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 32266289 - 32266233
Alignment:
| Q |
141 |
ttttgaattgtttctgcttctttagcttgattgatgataatataaattgatttaggt |
197 |
Q |
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| T |
32266289 |
ttttgtattgtttctggttctttagcttgattgatgataatataaattaattaaggt |
32266233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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