View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21342_low_23 (Length: 238)
Name: NF21342_low_23
Description: NF21342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21342_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 3427106 - 3426896
Alignment:
| Q |
11 |
atcatcaacctccaacactcatagacttaaactatgacggtgacgatgaaaatgatgaaaatgaaagaatctccacaaaccttactataatgtatagaca |
110 |
Q |
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| T |
3427106 |
atcatcaacctccaacactcatagacttaaactatgacggtgacgatgaaaatgatgaaaatgaaagaatctccacaaaccttactataatgtatagaca |
3427007 |
T |
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| Q |
111 |
acttgtctcaaatggaaaaacttcaactctattcctcggaagctcttaccgtgccggtgatcaacccgatccaggtgctggatccatagagaatgttcca |
210 |
Q |
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| T |
3427006 |
acttgtctcaaatggaaaaacttcaactctattcctcggaagctcttaccgtgccggtgatcaacccgatccaggtgctggatccatagagaatgttcca |
3426907 |
T |
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| Q |
211 |
catggaccagt |
221 |
Q |
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| T |
3426906 |
catggaccagt |
3426896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 3433297 - 3433086
Alignment:
| Q |
11 |
atcatcaacctccaacactcatagacttaaactatga------cggtga---cgatgaaaatgatgaaaatgaaagaatctccacaaaccttactataat |
101 |
Q |
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| T |
3433297 |
atcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccacaaaccttactataat |
3433198 |
T |
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| Q |
102 |
gtatagacaacttgtctcaaatggaaaaacttcaactctattcctcggaagctcttaccgtgccggtgatcaacccgatccaggtgctggatccatagag |
201 |
Q |
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| T |
3433197 |
gtatagacaggttgtgtctggtggaaaaacctcaacacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtgctggatccgtagag |
3433098 |
T |
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| Q |
202 |
aatgttccacat |
213 |
Q |
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| T |
3433097 |
attgttccacat |
3433086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 11897172 - 11897278
Alignment:
| Q |
13 |
catcaacctccaacactcatagacttaaactatga------cggtgac---gatgaaaatgatgaaaatgaaagaatctccacaaaccttactataatgt |
103 |
Q |
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|||||||||||||||||||||||||| ||||||| || |||| |||||| ||| ||||||| | | |||| |||||||||||||||||||| |
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| T |
11897172 |
catcaacctccaacactcatagacttcaactatggtcactgcgatgacatcgatgaagatggtgaaaataacataatccacacaaaccttactataatgt |
11897271 |
T |
|
| Q |
104 |
atagaca |
110 |
Q |
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||||||| |
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| T |
11897272 |
atagaca |
11897278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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