View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21342_low_25 (Length: 235)
Name: NF21342_low_25
Description: NF21342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21342_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 7278921 - 7278726
Alignment:
| Q |
18 |
cacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggt |
117 |
Q |
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| T |
7278921 |
cacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggt |
7278822 |
T |
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| Q |
118 |
aataaaattgaagctttggtgaatgaggatggcgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa |
213 |
Q |
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| T |
7278821 |
aataaaattgaagctttggtgaatgaggatggtgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa |
7278726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 7374918 - 7375113
Alignment:
| Q |
18 |
cacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggt |
117 |
Q |
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| T |
7374918 |
cacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggt |
7375017 |
T |
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| Q |
118 |
aataaaattgaagctttggtgaatgaggatggcgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa |
213 |
Q |
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| T |
7375018 |
aataaaattgaagctttggtgaatgaggatggcgaggtgaattgtatggagaaagaagagagggggtatgaagagaagaatgagggaggtgaaaaa |
7375113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 7278783 - 7278700
Alignment:
| Q |
66 |
gaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgaggatgg |
149 |
Q |
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| T |
7278783 |
gaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatgg |
7278700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 7278593 - 7278542
Alignment:
| Q |
163 |
atggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaat |
214 |
Q |
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| T |
7278593 |
atggaggaagaagatagggggtgtaaggaggagaatgagggaggtgaaaaat |
7278542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 7375056 - 7375139
Alignment:
| Q |
66 |
gaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgaggatgg |
149 |
Q |
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| T |
7375056 |
gaattgtatggagaaagaagagagggggtatgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatgg |
7375139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 7375246 - 7375297
Alignment:
| Q |
163 |
atggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaat |
214 |
Q |
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|||||| ||||||| ||||||||| | ||| ||||||||||||||||||||| |
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| T |
7375246 |
atggaggaagaagatagggggtgtaaggaggagaatgagggaggtgaaaaat |
7375297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 7278576 - 7278520
Alignment:
| Q |
90 |
ggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgagga |
146 |
Q |
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| T |
7278576 |
ggggtgtaaggaggagaatgagggaggtgaaaaatttgaagctttggggaatgagga |
7278520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 7375263 - 7375319
Alignment:
| Q |
90 |
ggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgagga |
146 |
Q |
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||||||| | |||||||||||||| ||| | ||| |||||||||||| ||||||||| |
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| T |
7375263 |
ggggtgtaaggaggagaatgagggaggtgaaaaatttgaagctttggggaatgagga |
7375319 |
T |
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