View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21342_low_26 (Length: 221)

Name: NF21342_low_26

Description: NF21342

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF21342_low_26

[»] chr3 (3 HSPs)

Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 3)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 66; E-Value: 2e-29

Query Start/End: Original strand, 135 - 204

Target Start/End: Complemental strand, 52722295 - 52722226

Alignment:

Q	135	atgaaaattagaccatctaaccacaacaatttcacacattcatacgatcagtacatttaaggtcatttga	204	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	52722295	atgaaaattagaccatctaagcacaacaatttcacacattcatacgatcagtacatttaaggtcatttga	52722226	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2

Raw Score: 58; E-Value: 1e-24

Query Start/End: Original strand, 7 - 131

Target Start/End: Original strand, 52721868 - 52721992

Alignment:

Q	7	cagtatgccttagaggagctcaacatcatttgtaccattaataaaagtcatttattttcnnnnnnnnnnnnnnnnnnnnnttgacatatgatcaaaagta	106	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	52721868	cagtatgccttagaggagctcaacatcatttgtaccattaataaaagtaatttattttcaaaaataaaaaagaaaataaattgacatatgatcaaaagta	52721967	T

Q	107	agcattaaatttaacagtgtagaca	131	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	52721968	agcattaaatttaacagtgtagaca	52721992	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3

Raw Score: 44; E-Value: 3e-16

Query Start/End: Original strand, 135 - 202

Target Start/End: Complemental strand, 52713608 - 52713541

Alignment:

Q	135	atgaaaattagaccatctaaccacaacaatttcacacattcatacgatcagtacatttaaggtcattt	202	Q
		\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|
T	52713608	atgaaaactagatcatctaaccacaacaatttcacacattcacacgatcagtactttagaggtcattt	52713541	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]