View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21342_low_3 (Length: 571)
Name: NF21342_low_3
Description: NF21342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21342_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 41378648 - 41378966
Alignment:
| Q |
1 |
gttattgataataacacaattgaaaacaaaaagtggttttggcggttcatgtttgagattcaaagattgttttttgtttatagaacttcagtggaatatt |
100 |
Q |
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| T |
41378648 |
gttattgataataacacaattgaaaacaaaaagtggttttggcggttcatgtttgagattcaaagattgatttttgtttatagaacttcagtggaatatt |
41378747 |
T |
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| Q |
101 |
agcttttggatatgatgaaatgtgattgtcgaaatatttagtacacgttctatggtttttatagattgccagcctccaagtaccgtaagatttggtcaag |
200 |
Q |
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| T |
41378748 |
agcttttggatatgatgaaatgtgattgtcgaaatatttagtacacgttctatggtttttatagattgctagcctccaagtaccgtaagatttggtcaag |
41378847 |
T |
|
| Q |
201 |
aagaaacaagggggaaactttctaatgagaccaatattttatcttaaataatttaatatgaaaaaattacatagtccttcaattcaatataaagttttaa |
300 |
Q |
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| T |
41378848 |
aagaaacaagggggaaactttctaatgagaccaacattttatcttaaataatttaatatgaaaaaattacatagtccttcaattcaatataaagttttaa |
41378947 |
T |
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| Q |
301 |
agagatatgagaaaaacat |
319 |
Q |
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| T |
41378948 |
agagatatgagaaaaacat |
41378966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 415 - 553
Target Start/End: Original strand, 41379029 - 41379167
Alignment:
| Q |
415 |
gacaaaaacattaatatgatagagaacgagtttaaactcacattgtatttttatttttcaacatcaattagtgcatgtttggtattgtgatgaatccatt |
514 |
Q |
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| T |
41379029 |
gacaaaaacattaatacgatagagaacaagtttaaactcacattatatttttatttttcaacatcaattagtgcatgtttggtattgtgatggattcatt |
41379128 |
T |
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| Q |
515 |
aaaatcacgataattcatcataattttgcagaagttaac |
553 |
Q |
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| T |
41379129 |
aaaatcacgataattcatcataattttacagaagttaac |
41379167 |
T |
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