View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21342_low_4 (Length: 569)
Name: NF21342_low_4
Description: NF21342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21342_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 112 - 375
Target Start/End: Original strand, 28879206 - 28879464
Alignment:
| Q |
112 |
atgtacgattagtttgagtgaaaacatcaaattggatcttgattatatttatttatattttgattggacaacattattcacccctctccttagttcatgc |
211 |
Q |
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| T |
28879206 |
atgtacgattagtttgagtgaaaacatcaaattggatcttgattatatttatttatattttgattggacaacattattcacccctctccttagttcatgc |
28879305 |
T |
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| Q |
212 |
attcgtagtttcaacatctatggcagaagcaaaactaaggttagtatgactactacactactttgaattgaactacttcacttttctggggcccatatga |
311 |
Q |
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| T |
28879306 |
attcatagtttcaacatctatggcagaagcaaaactaaggttagtatgactactacactact-----ttgaactacttcacttttctggggcccatatga |
28879400 |
T |
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| Q |
312 |
ttttcttcttcnnnnnnngacaaaattctttcatatcaaccagcctacatgcaaagattcaata |
375 |
Q |
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| T |
28879401 |
ttttcttcttctttttttgacaaaattctttcatatcaaccagcctacatgcaaagattcaata |
28879464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 392 - 569
Target Start/End: Original strand, 28879526 - 28879703
Alignment:
| Q |
392 |
gtttgttcttttcaggaatgctgttgttactggctcaaataaagggataggatttgagactgttaaaatgttggcctcaaatggtgtcaaggtgatgctc |
491 |
Q |
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| T |
28879526 |
gtttgttcttttcaggaatgctgttgttactggctcaaataaagggataggatttgagactgttaaaatgttggcctcaaatggtgtcaaggtgatgctc |
28879625 |
T |
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| Q |
492 |
acagctagagatgagaaaaaagggaatgaagccattgagaaattgaaacattttggtctctctgaccaagttatgttt |
569 |
Q |
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| T |
28879626 |
acagctagagatgagaaaaaggggaatgaagccattcagaaattgaaacagtttggtctctctgaccaagttatgttt |
28879703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 393 - 569
Target Start/End: Original strand, 28884420 - 28884596
Alignment:
| Q |
393 |
tttgttcttttcaggaatgctgttgttactggctcaaataaagggataggatttgagactgttaaaatgttggcctcaaatggtgtcaaggtgatgctca |
492 |
Q |
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| T |
28884420 |
tttgtgcttttcaggtatgcagttgttactgggtcaaacaaagggataggatttgagactgttaaaatgttggcctcaaatggtgtcaaggtggtgctta |
28884519 |
T |
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| Q |
493 |
cagctagagatgagaaaaaagggaatgaagccattgagaaattgaaacattttggtctctctgaccaagttatgttt |
569 |
Q |
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| T |
28884520 |
cagctagagatgagaaaaaagggaatgaagccattcagaaattgaaacagtttggtctctctgaccaagttatgttt |
28884596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 28879009 - 28879119
Alignment:
| Q |
3 |
aagggaattgaatataactcggtctggctaaaataagggacattagctagttgtccaacatcaatgtaatgttatatatttttctgatgttgcttagatc |
102 |
Q |
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| T |
28879009 |
aagggaattgaatataactcggtctggctaaaataagggacattagctagttgtccaacatcaatgtaatgt--tatatttttctgatgttgcttagatc |
28879106 |
T |
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| Q |
103 |
cgttttgtaatgt |
115 |
Q |
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| T |
28879107 |
cgttttgtaatgt |
28879119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 140 - 266
Target Start/End: Original strand, 28883767 - 28883897
Alignment:
| Q |
140 |
aaattggatcttgattatatttatttatattt-tgattggacaacatt-attcacccctctccttagttcatgcattcgtag--tttcaacatctatggc |
235 |
Q |
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||||||||| || ||| || |||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||| | | ||||| |||||||||| |
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| T |
28883767 |
aaattggattttcattctaattatttatatttctgattagattacatttattcacccctctccttagttcatgcattcattgaatttcagcatctatggc |
28883866 |
T |
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| Q |
236 |
agaagcaaaactaaggttagtatgactacta |
266 |
Q |
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| T |
28883867 |
agaagcaaaactaaggttagtattactacta |
28883897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 475
Target Start/End: Complemental strand, 11952996 - 11952921
Alignment:
| Q |
400 |
ttttcaggaatgctgttgttactggctcaaataaagggataggatttgagactgttaaaatgttggcctcaaatgg |
475 |
Q |
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| T |
11952996 |
ttttcagatatgctgttgttacaggatcaaataaaggtataggattggaaactgttaaaagattggcttcaaatgg |
11952921 |
T |
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