View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21342_low_6 (Length: 395)
Name: NF21342_low_6
Description: NF21342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21342_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 377
Target Start/End: Original strand, 39314707 - 39315080
Alignment:
| Q |
13 |
tgaagtatcacggctaagcattcatcaggaatttcctccgagtaattcacagcgttgatgaaatcatcggaagaaacaccgttaccgtatccgttgccgt |
112 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39314707 |
tgaagtatcccggctaagcattcatcaggaatttcctccgagtaattcacaccgttgatgaaatcatcggaagaaacaccgttaccgtatccgttgccgt |
39314806 |
T |
|
| Q |
113 |
caccgtaacggaatcggttaacgtctagtgacggtgacggaacggcggtggacggtgattgtcccatagaagaaaaagaaataataatgagagaaaaata |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39314807 |
caccgtaacggaatcggttaacgtctagtgacggtgacggaacggcggtggacggtgattgtcccatagaagaaaaagaaataataatgagagaaaaata |
39314906 |
T |
|
| Q |
213 |
atatttaattatttttgataagtttatgatgaaaatgtgagaagcatgaaatga---------aggagaagacacatatagagatagaaaggttttcaac |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||| |
|
|
| T |
39314907 |
atatttaattatttttgataagtttatgatgaaaatgtgagaagcatgaaatgaagagaacttagaaggagacacatatagagatagaaaggttttcaac |
39315006 |
T |
|
| Q |
304 |
gatatcaatctgtcaaagggttaagcgcgtgtcgttttagcaaccactgaaggaaagggtttatgactgtaact |
377 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39315007 |
gatatcactctgtcaaagggttaagcgcgtgtcgttttagcaaccactgaaggaaagggtttattactgtaact |
39315080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University