View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21342_low_8 (Length: 379)
Name: NF21342_low_8
Description: NF21342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21342_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 34465229 - 34464889
Alignment:
| Q |
17 |
agggttaacatcattgtagtcatggtgatgaatgagtaggtccaagtttgaactagaagtaggaaagagttactagtatttgttcattttgcatttgttg |
116 |
Q |
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| T |
34465229 |
agggttaacgtcattgtagtcattgtgatgaatgagtaggtccaagtttgaactagaagtaggaaagagttactagtatttgttcattttgcatttgttg |
34465130 |
T |
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| Q |
117 |
ttggannnnnnnggttttattaagttgtggtttctagctagctaccatataggtagctatgttatgatgaaatgctacaagctaagaactgcttattagt |
216 |
Q |
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| T |
34465129 |
ttggatttttttggttttattaagttgtggtttctagctagc----atataggtagctatgttatgatgaaatgctacaagctaagaactggttattact |
34465034 |
T |
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| Q |
217 |
gtgaaggtggtagccgatggtaaatgtgaaactgggaagcacggacactcttcaaattagacatattataatattggatacatattgtgttcaacattga |
316 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| | |||||||||||||| |||| | |
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| T |
34465033 |
gtgaaggtggtagccgatggtaaatatgaaattgggaagcacggatactcttcaaattagacatattacattattggatacatatcatgtt--------a |
34464942 |
T |
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| Q |
317 |
cacatcattaatacatataattatactgtgatattggtgtatcggtatctgtg |
369 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |
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| T |
34464941 |
cacatcattaatacatataattatactgtgatgttgatgtattggtatctgtg |
34464889 |
T |
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