View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21343_high_3 (Length: 378)

Name: NF21343_high_3
Description: NF21343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21343_high_3
NF21343_high_3
[»] chr3 (8 HSPs)
chr3 (30-366)||(25085035-25085369)
chr3 (166-367)||(24982042-24982243)
chr3 (140-367)||(24923419-24923646)
chr3 (156-367)||(24497234-24497445)
chr3 (30-367)||(24919721-24920072)
chr3 (157-366)||(31825533-31825742)
chr3 (166-366)||(21584582-21584782)
chr3 (162-203)||(14858629-14858670)
[»] chr7 (4 HSPs)
chr7 (169-366)||(10575384-10575581)
chr7 (174-360)||(39954838-39955024)
chr7 (221-366)||(354401-354547)
chr7 (255-366)||(10580784-10580895)
[»] chr8 (1 HSPs)
chr8 (166-366)||(14261017-14261217)
[»] chr2 (1 HSPs)
chr2 (197-339)||(41027596-41027738)
[»] chr4 (3 HSPs)
chr4 (191-363)||(22898553-22898725)
chr4 (191-363)||(22950221-22950393)
chr4 (174-360)||(53328717-53328903)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 30 - 366
Target Start/End: Complemental strand, 25085369 - 25085035
Alignment:
Q  30 aaactgaataagcttcgatctaattcagaatcaattgtcacatattaccctaaacatcaatgaagctttctaatgtgcaattgcaagtctaaggcaaaag 129  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25085369 aaactgaataagcttcgatctaattgagaatcaattgtcacatattaccctaaacatcaatgaagctttctaatgtgcaattacaagtctaaggcaaaag 25085270  T
Q  130 aaaataacatataaactaaagagtgtttcttctttgtcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatcc 229  Q
    ||||||||| |||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  25085269 aaaataacaaataaactaaagagtgtttcttct--gtcttcttcaacctccaaaaccatagagggttcttccctgtctcttcaaagcatagacaacatcc 25085172  T
Q  230 atggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcat 329  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||    
T  25085171 atggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcat 25085072  T
Q  330 agatcaaaccactgattctcttcacaccacctcttct 366  Q
    | |||||||||||||||||||||||||||||||||||    
T  25085071 atatcaaaccactgattctcttcacaccacctcttct 25085035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 166 - 367
Target Start/End: Complemental strand, 24982243 - 24982042
Alignment:
Q  166 tcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtg 265  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  24982243 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg 24982144  T
Q  266 tatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttc 365  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  24982143 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctcttc 24982044  T
Q  366 tt 367  Q
    ||    
T  24982043 tt 24982042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 140 - 367
Target Start/End: Original strand, 24923419 - 24923646
Alignment:
Q  140 ataaactaaagagtgtttcttctttgtcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaa 239  Q
    ||||||||||||||||||||||||  | ||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| || |    
T  24923419 ataaactaaagagtgtttcttcttcatattcttcaacctccaaatccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtca 24923518  T
Q  240 cagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaacc 339  Q
    | |||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24923519 ctgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaacc 24923618  T
Q  340 actgattctcttcacaccacctcttctt 367  Q
    |||||||||||| |||||||||||||||    
T  24923619 actgattctcttaacaccacctcttctt 24923646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 156 - 367
Target Start/End: Original strand, 24497234 - 24497445
Alignment:
Q  156 ttcttctttgtcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgc 255  Q
    ||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  24497234 ttcttgtttttcttcatcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgc 24497333  T
Q  256 atgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcaca 355  Q
     |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  24497334 gtgctcagtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaaca 24497433  T
Q  356 ccacctcttctt 367  Q
    ||||||||||||    
T  24497434 ccacctcttctt 24497445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 30 - 367
Target Start/End: Original strand, 24919721 - 24920072
Alignment:
Q  30 aaactgaataagcttcgatctaattcagaatcaattgtcacatattaccctaaacatcaatgaagctttctaatgtgcaattgca------------agt 117  Q
    |||||||| ||| ||||||||| |  ||||||| || | |||||||||||||||||||| |||| |||||||| |||||||||||            |||    
T  24919721 aaactgaaaaagtttcgatctactcgagaatcacttataacatattaccctaaacatcattgaaactttctaaggtgcaattgcatattcaaattaaagt 24919820  T
Q  118 ctaaggcaaaagaaaataacatataaactaaagagtgtttcttctttgtcttct---tcaacctccgaaaccatagagggttcttccttgtctcttcaaa 214  Q
    ||||||||||| ||||||| | |||||||||| |||| ||||||||  |||||    |||||||||||| ||||||||||||||||| || |||||||||    
T  24919821 ctaaggcaaaataaaataaaaaataaactaaa-agtgcttcttcttcatcttcagcatcaacctccgaatccatagagggttcttccctgcctcttcaaa 24919919  T
Q  215 gcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacac 314  Q
    |||||||| ||||||||||| || || ||||||||||| || |||||||||||||| || ||||||||||||||||| || |||||||||||||||||||    
T  24919920 gcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtcacagcatcacgaatgacattctctaagaagatcttcaagacac 24920019  T
Q  315 ctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttctt 367  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24920020 ctctggtttcttcatagatcaaaccgctgattctcttcacaccacctcttctt 24920072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 157 - 366
Target Start/End: Original strand, 31825533 - 31825742
Alignment:
Q  157 tcttctttgtcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgca 256  Q
    |||||||  ||||| |||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||| ||     
T  31825533 tcttcttcttcttcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcg 31825632  T
Q  257 tgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacac 356  Q
    |||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  31825633 tgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacac 31825732  T
Q  357 cacctcttct 366  Q
    ||||||||||    
T  31825733 cacctcttct 31825742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 166 - 366
Target Start/End: Original strand, 21584582 - 21584782
Alignment:
Q  166 tcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtg 265  Q
    |||||||||||||||||| ||||| || ||||||||||| |||||||||||||| ||||||||||| || || |||||||||||||||||||||||||||    
T  21584582 tcttcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtg 21584681  T
Q  266 tatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttc 365  Q
    || ||||| ||||||||||| ||||| |||||||| ||||| |  || ||||| ||||| ||||| |||||||||||||||||||| |||||||||||||    
T  21584682 tacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttc 21584781  T
Q  366 t 366  Q
    |    
T  21584782 t 21584782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 14858629 - 14858670
Alignment:
Q  162 tttgtcttcttcaacctccgaaaccatagagggttcttcctt 203  Q
    |||||||||||||||| || ||||| ||||||||||||||||    
T  14858629 tttgtcttcttcaaccaccaaaaccgtagagggttcttcctt 14858670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 169 - 366
Target Start/End: Complemental strand, 10575581 - 10575384
Alignment:
Q  169 tcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtat 268  Q
    ||||||||| |||||||||||||||||||||||||||||||| |  || || ||||||||||| || || ||||| |||||||| ||||||||||||||     
T  10575581 tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaa 10575482  T
Q  269 gtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttct 366  Q
    ||||| ||||| |  || ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||||||    
T  10575481 gtaacagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttct 10575384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 174 - 360
Target Start/End: Original strand, 39954838 - 39955024
Alignment:
Q  174 aacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaac 273  Q
    |||| |||||||| ||||| || ||||| || ||||| | |||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||    
T  39954838 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 39954937  T
Q  274 tgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacc 360  Q
     ||||||||||| ||||| || |  |||||||| |  ||||| |  || ||||| ||||| | ||| ||||||||||||||||||||    
T  39954938 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccacc 39955024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 221 - 366
Target Start/End: Complemental strand, 354547 - 354401
Alignment:
Q  221 acaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctgg 320  Q
    ||||||||||| || || | ||||||||||||||||||||||||||| ||||| ||||||| |||  |||| | |||||| |||||||| || |||||      
T  354547 acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta 354448  T
Q  321 tttcttcataga-tcaaaccactgattctcttcacaccacctcttct 366  Q
    |||| ||||||| | ||||||||||| ||||||||||||||||||||    
T  354447 tttcctcatagattaaaaccactgatcctcttcacaccacctcttct 354401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 255 - 366
Target Start/End: Complemental strand, 10580895 - 10580784
Alignment:
Q  255 catgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcac 354  Q
    ||||||||||||| ||||| |||||| ||||   ||| | |||||| |||||||| |  |||||  |||| |||||||||||||||||||| ||||||||    
T  10580895 catgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctcttatttcctcatagatcaaaccactgatcctcttcac 10580796  T
Q  355 accacctcttct 366  Q
    |||| |||||||    
T  10580795 accaactcttct 10580784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 166 - 366
Target Start/End: Original strand, 14261017 - 14261217
Alignment:
Q  166 tcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtg 265  Q
    |||||||||||||||||||||||| |  || ||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||| ||||| |||||     
T  14261017 tcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagta 14261116  T
Q  266 tatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttc 365  Q
    || ||||| ||||| |  || ||||| |||||||| |||||||| ||||| |  ||||||||||| ||||| || ||||||||||||||||| |||||||    
T  14261117 tacgtaacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttc 14261216  T
Q  366 t 366  Q
    |    
T  14261217 t 14261217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 197 - 339
Target Start/End: Complemental strand, 41027738 - 41027596
Alignment:
Q  197 cttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacattttcca 296  Q
    ||||||||||||||||| ||||| ||||||||||| || ||||||||||| ||||| || ||||| ||||| ||||| ||||||||||| ||||| ||||    
T  41027738 cttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctcca 41027639  T
Q  297 agaagatcttcaagacacctctggtttcttcatagatcaaacc 339  Q
    | ||||||||||| || || |  || ||||| |||||||||||    
T  41027638 aaaagatcttcaacacgccacgtgtctcttcgtagatcaaacc 41027596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 363
Target Start/End: Complemental strand, 22898725 - 22898553
Alignment:
Q  191 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacat 290  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| || || ||||||||||| || || ||||| | ||| ||||    
T  22898725 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22898626  T
Q  291 tttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctct 363  Q
    | ||||| || |||||||| || || |  || || ||||| |||||||||||||| | |||||| || |||||    
T  22898625 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctct 22898553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 363
Target Start/End: Complemental strand, 22950393 - 22950221
Alignment:
Q  191 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacat 290  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| || || ||||||||||| || || ||||| | ||| ||||    
T  22950393 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22950294  T
Q  291 tttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctct 363  Q
    | ||||| || |||||||| || || |  || || ||||| |||||||||||||| | |||||| || |||||    
T  22950293 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctct 22950221  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 174 - 360
Target Start/End: Complemental strand, 53328903 - 53328717
Alignment:
Q  174 aacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaac 273  Q
    |||| |||||||| || || || ||||| || ||||| | ||| || ||||||||||| || ||||||||||| |  |  |||||||| |||||||| ||    
T  53328903 aacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgac 53328804  T
Q  274 tgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacc 360  Q
     ||||||||||| ||||| || |  |||||||| |  || || |  |||||||||||||| || |||||||| | ||||||||||||    
T  53328803 agcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccacc 53328717  T

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