View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21343_high_6 (Length: 346)
Name: NF21343_high_6
Description: NF21343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21343_high_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 30 - 346
Target Start/End: Complemental strand, 36329866 - 36329552
Alignment:
| Q |
30 |
attatctgttatccgtgatgggcttatactgtttctcatatggtataaggggttactaattgctatttgccaccctttttctactacacgccatctccat |
129 |
Q |
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| T |
36329866 |
attatctgttatccgtgatgggcttatactgtttctcatatggtataaggggttgctaattgctatttgccaccctttttctactacacgccatctccat |
36329767 |
T |
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| Q |
130 |
gtaaattaacttgtcccctcaaaataacnnnnnnncctaccacacagtatctatccaatcaataatttgattaataatacataaatctatctctgaaaga |
229 |
Q |
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| T |
36329766 |
gtaaattaacttgtcccctcaaaataactttttttcctaccacacattatctatccaatcaataatttaattaataacacataaatctatctctgaaag- |
36329668 |
T |
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| Q |
230 |
nnnnnnnnnagcaaaaacctatgttctgaaagttgtttccaaattatttatacttttgagatatatatcatgtttcctatgcacgctttatatatttagc |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||| | | | |||||| ||||| |
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| T |
36329667 |
tttttttttagcaaaaacctatgttctgaaagttgtttccaaattatttatacttttgggatatatagaatgttgccgatgaaaggtgtatata-ttagc |
36329569 |
T |
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| Q |
330 |
acaaataaaatttgtat |
346 |
Q |
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| T |
36329568 |
aaaaataaaatgtgtat |
36329552 |
T |
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