View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21343_low_1 (Length: 411)
Name: NF21343_low_1
Description: NF21343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21343_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Original strand, 36329178 - 36329550
Alignment:
| Q |
19 |
gtactaggtaatttaagaccaagaatttcatctttttcaacaaaacnnnnnnnnnttaaagaccaagaattatatggcaatatattttccttgaaagtaa |
118 |
Q |
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| T |
36329178 |
gtactaggtaatttaagaccaagaatttcatctttttcaacaaaa--aaaaaaaataaaagaccaagaattatatggcaatatattttccttgaaagtaa |
36329275 |
T |
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| Q |
119 |
tagtcacgtatgaaaaataaccgttgggtatgggggtgcaggggcgtttgcttttgagagcatggcaactctagcactagcagtgaactttgtgtcatac |
218 |
Q |
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| T |
36329276 |
tagtcacgtatgaaaaataaccgttgggtatgggggtgcaggggcgtttgcttttgagagcatggcaactctagcactagcagtgaactttgtgtcatac |
36329375 |
T |
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| Q |
219 |
ttcattgggattatgcactatgaactagcagatgcagctaacatggtaaccaatttcatgggagttagtaacttgctctccattgtcgtcgccgttcttg |
318 |
Q |
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| T |
36329376 |
ttcattgggattatgcattatgaactagcagatgcagctaacatggtaaccaatttcatgggagttagtaacttgctctccattgtcgtcgccgttcttg |
36329475 |
T |
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| Q |
319 |
ctgatacattcattggaagatataaaaccgttcttatttctggcttctttgagtgtttggtaagttttcatacta |
393 |
Q |
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| T |
36329476 |
ctgattcattcattggaagatataaaaccgttcttatttctggcttctttgagtgtttggtaagttttcatacta |
36329550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 153 - 385
Target Start/End: Original strand, 36322512 - 36322744
Alignment:
| Q |
153 |
ggtgcaggggcgtttgcttttgagagcatggcaactctagcactagcagtgaactttgtgtcatacttcattgggattatgcactatgaactagcagatg |
252 |
Q |
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| T |
36322512 |
ggtgcaggggcgtttgcgcttgagaacatggcaacttttgcactagcagtgaactttgtgtcatacttcgttggtttcatgcattatgaactagcagatg |
36322611 |
T |
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| Q |
253 |
cagctaacatggtaaccaatttcatgggagttagtaacttgctctccattgtcgtcgccgttcttgctgatacattcattggaagatataaaaccgttct |
352 |
Q |
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||||||||||||||||||| |||||||| ||| || || |||||||||||||||| |||||| |||||||||||| ||||||||| | ||| ||||||| |
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| T |
36322612 |
cagctaacatggtaaccaacttcatgggggtttgttacatgctctccattgtcgtagccgtttttgctgatacatggattggaagacacaaatccgttct |
36322711 |
T |
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| Q |
353 |
tatttctggcttctttgagtgtttggtaagttt |
385 |
Q |
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| T |
36322712 |
tatttctggctgctttgagtttttggtaagttt |
36322744 |
T |
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