View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21343_low_2 (Length: 381)
Name: NF21343_low_2
Description: NF21343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21343_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 28829157 - 28829513
Alignment:
| Q |
18 |
agattacacataataatataaagtgaatagaatatctaaaatctaagtagttatttaacataagttgttgacttgttgcataagtatcgtgtatccgtag |
117 |
Q |
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| T |
28829157 |
agattacacataataatataaagtgaatagaatctctaaaacctaagtagttatttaacataaattgttgacttgttgcacaagtatcgtgtatctgtag |
28829256 |
T |
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| Q |
118 |
gctcgttttgaagtatgcaattagaagaagatagcatactaattaatcacttgttaattatggtagaaaacataattatcacttgagtgtgtcgtcaatc |
217 |
Q |
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| T |
28829257 |
gctcgttttgaagtatgcaattagaagaagatagcatactaattaatcactagttaattatggtagaaaacatatttatcacttgagtgtgtcgtcaatc |
28829356 |
T |
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| Q |
218 |
agcattattgagcacttccacaaaaaggtcttctttccacatgttaaattaggggggtcatatc----catgtaacagaacatgatgtctcaatttcaac |
313 |
Q |
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| T |
28829357 |
agcattattgagcacttccacaaaaaggtcttctttccatatgttaatttaggagggccatatccatgcatgtaacagaacatgatgtctcaatttcaac |
28829456 |
T |
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| Q |
314 |
attataaatatgctttatacactttttgtatacttgcatacaattccatgttttctt |
370 |
Q |
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| T |
28829457 |
attataaatatgctttatacactttttgtatacacgcatacacttccatgttttctt |
28829513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 22198601 - 22198665
Alignment:
| Q |
124 |
tttgaagtatgcaattagaagaagatagcatactaattaatcacttgttaattatggtagaaaacata |
191 |
Q |
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| T |
22198601 |
tttgaagcatgcaattagaa---gatagcatactaattaatcactagttaattatggtagaaaacata |
22198665 |
T |
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