View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21343_low_5 (Length: 351)
Name: NF21343_low_5
Description: NF21343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21343_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 33019972 - 33020304
Alignment:
| Q |
1 |
ggcacgggcaggccaagatgtcgcactctcttcaaccctacggattatatccaaaagcaattcaggtggtagatatgcccactgtccctgttgaacgggt |
100 |
Q |
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| T |
33019972 |
ggcacgggcaggccaagatgtcgcactctcttcaaccctacggattatatccaaaagcaattcaggtggtagatatgcccactgtccctgttgaacaggt |
33020071 |
T |
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| Q |
101 |
tcaattggagttacatccagtgcaacatgggactttgtccgacagagcctatgcttggtctcaacactctttgatatgctacctagtcgatttttcatgc |
200 |
Q |
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| T |
33020072 |
tcaattggagttacatccagtgcaacatgggactttgtccgacagagcctatgcttggtctcaacactctttgatatgctacctagtcgatttttcatgc |
33020171 |
T |
|
| Q |
201 |
ccttgagtttgcagactatgtttttcaatgacatgcttccacactgcgtcgcaacacaaaactgctccaatctaaacgcactcttctaaatttctgatcc |
300 |
Q |
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| T |
33020172 |
ccttgagtttgcagactatgattttcaatgacatgcttccacactgcgtcgcaacacaaaactgctccaatctaaatgcactcttctaaatttctgatcc |
33020271 |
T |
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| Q |
301 |
ttatagaatagaaaaattaacttgtgataatga |
333 |
Q |
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| T |
33020272 |
ttatagaatagaaaaattaacttgtgataatga |
33020304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 32828826 - 32828584
Alignment:
| Q |
2 |
gcacgggcaggccaagatgtcgcactctcttcaaccctacggattatatccaaaagcaattcaggtggtagatatgcccactgtccctgttgaacgggtt |
101 |
Q |
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| T |
32828826 |
gcacgagcaggccaagatgtctcactctcttcaaccctacggattatgtccaaaagcaattcaggaggtagactcgcccattgtccttgttgaataggtt |
32828727 |
T |
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| Q |
102 |
caattggagttacatccagtgcaacatgggactttgtccgacagagcctatgcttggtctc---aacactctttgatatgctacctagtcgatttttcat |
198 |
Q |
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| T |
32828726 |
caattggagttacatccggagcaacatgcgactttgaccgacatagccaattcttggtgtcggaaccccgttttgatatgctacctattccatttttcat |
32828627 |
T |
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| Q |
199 |
gcccttgagtttgcagactatgtttttcaatgacatgcttcca |
241 |
Q |
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| T |
32828626 |
ccccttgagttcgcggactatacttttgaatgacatgtttcca |
32828584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 2 - 297
Target Start/End: Original strand, 33041107 - 33041390
Alignment:
| Q |
2 |
gcacgggcaggccaagatgtcgcactctcttcaaccctacggattatatccaaaagcaattcaggtggtagatatgcccactgtccctgttgaacgggtt |
101 |
Q |
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||||| ||||||||| ||||| |||||| ||||||||| |||||||| |||||||||||||||||||||||| |||||| ||||||||||||| |||| |
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| T |
33041107 |
gcacgtgcaggccaaaatgtctcactcttttcaacccttcggattatgtccaaaagcaattcaggtggtagacttgcccattgtccctgttgaataggtt |
33041206 |
T |
|
| Q |
102 |
caattggagttacatccagtgcaacatgggactttgtccgacagagcctatgcttggtctcaacactctttgatatgctacctagtcgatttttcatgcc |
201 |
Q |
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| T |
33041207 |
caattggagttacatccagagcaacgtgggaatttgaccgacagaacatatgcttgctc------------catatgctacctattccattttttatccc |
33041294 |
T |
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| Q |
202 |
cttgagtttgcagactatgtttttcaatgacatgcttccacactgcgtcgcaacacaaaactgctccaatctaaacgcactcttctaaatttctga |
297 |
Q |
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| T |
33041295 |
cttgagtttgcggcctaagcttttcgatgacatgtttccacactctgttgcaacataaaactgcaccaatccagatgcaagcttctaaatttctga |
33041390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 33026021 - 33026092
Alignment:
| Q |
2 |
gcacgggcaggccaagatgtcgcactctcttcaaccctacggattatatccaaaagcaattcaggtggtaga |
73 |
Q |
| |
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||||| ||||||||||||||| |||| ||||||||| |||||||||| ||||||||||||||| |||||||| |
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| T |
33026021 |
gcacgtgcaggccaagatgtctcactttcttcaaccttacggattatgtccaaaagcaattcacgtggtaga |
33026092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 33030580 - 33030660
Alignment:
| Q |
218 |
atgtttttcaatgacatgcttccacactgcgtcgcaacacaaaactgctccaatctaaacgcactcttctaaatttctgat |
298 |
Q |
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|||||||| |||||| || ||||| ||| ||| ||||||||||||||| |||||| ||||| || ||||||||||||||| |
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| T |
33030580 |
atgtttttaaatgacttgtttccaaactccgtagcaacacaaaactgcaccaatccaaacgtacaattctaaatttctgat |
33030660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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