View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21343_low_7 (Length: 303)
Name: NF21343_low_7
Description: NF21343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21343_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 38 - 259
Target Start/End: Complemental strand, 36330104 - 36329883
Alignment:
| Q |
38 |
ccaactaacgatctcaacaaactaagtaactcctctgacttgttcaacaagtcactaactaactaaaacagttatttgcacaatataaatcaattcatga |
137 |
Q |
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| T |
36330104 |
ccaactaacgatctcaacaaactaagtaactcctctgacttgttcaacaagtcactaactaactaaaacagttatttgcacaatataaatcaattcatga |
36330005 |
T |
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| Q |
138 |
atcgattcactacttacttgaattacaagtaattattcctaaatatgaattatctcacaacaatcagatggaacttgttagattcgttagaacttaattt |
237 |
Q |
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| T |
36330004 |
atcgattcactacttacttgaattacaagtaattattcctaaatatgaattatctcacaacaattagatagaacttgttagattcgttagaacttaattt |
36329905 |
T |
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| Q |
238 |
tggtctgcccatgctgcttttc |
259 |
Q |
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|||||||||||||||||||||| |
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| T |
36329904 |
tggtctgcccatgctgcttttc |
36329883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 36330368 - 36330404
Alignment:
| Q |
253 |
gcttttctcttcattagtctatacttgttggcctttg |
289 |
Q |
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| T |
36330368 |
gcttttctcttcattagtctatacttgttggcctttg |
36330404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 50 - 242
Target Start/End: Original strand, 115015 - 115217
Alignment:
| Q |
50 |
ctcaacaaactaagtaactcctctgacttgttcaacaagtcacta----actaactaaaacagttatttgcacaatataaatcaattcatgaatcgattc |
145 |
Q |
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| T |
115015 |
ctcaataaactaactaactccactgacttgttcaacaagtcactagcatactaactaaaacagctaattgcacaatatgaatcaattcacgaatcgattc |
115114 |
T |
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| Q |
146 |
actacttacttgaattac------aagtaattattcctaaatatgaattatctcacaacaatcagatggaacttgttagattcgttagaacttaattttg |
239 |
Q |
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||| |||||||| ||||| |||||||||||| |||| | |||||||||||||||| | | |||||||||||||||||| |||||| ||||||||| |
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| T |
115115 |
actgcttacttgtattacaagtaaaagtaattattcataaacaagaattatctcacaacagttacatggaacttgttagattcattagaatttaattttg |
115214 |
T |
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| Q |
240 |
gtc |
242 |
Q |
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||| |
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| T |
115215 |
gtc |
115217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 185
Target Start/End: Original strand, 32986221 - 32986364
Alignment:
| Q |
39 |
caactaacgatctcaacaaactaagtaactcctctgacttgttcaacaagtcactaactaactaaaacagttatttgcacaatataaatcaattcatgaa |
138 |
Q |
| |
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|||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||| | || ||||| || ||||| || |
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| T |
32986221 |
caactaaccatctcaacaaactagctaacacctcttacttgttcaacaagtcactaacta---aaaacagttatgtaaactatatagattgattcaccaa |
32986317 |
T |
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| Q |
139 |
tcgattcactacttacttgaattacaagtaattattcctaaatatga |
185 |
Q |
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|| |||||| ||||||| ||||||||| ||||||| |||| |||| |
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| T |
32986318 |
tcaattcacagattacttgtattacaagtgattattcttaaacatga |
32986364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 37919870 - 37919906
Alignment:
| Q |
253 |
gcttttctcttcattagtctatacttgttggcctttg |
289 |
Q |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
37919870 |
gcttttctcttcattagtctatacgtgttggcctttg |
37919906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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